Man pages for GranderLab/ClusterSignificanceExtras
A package allowing re-creation of all figures in the publication associated with the ClusterSignificance package
| addOnePoint | Add data point |
| calculateOverlap | Calculate Overlap |
| checkIdenticalDims | Check Identical Dimensions |
| checkIdenticalMatrix | Check Identical Matrices |
| checkIdenticalPoints | Check Identical Points |
| dynamicXY | Dynamic X and Y setter |
| extendToMatch | Used if LHS is larger than RHS |
| g | Grouping the left hand side |
| hematologicalCancers | Hematological Cancers |
| hemCancData | tSNE results dataset. |
| hundred | Hundred overlap dataset. |
| interspersion | Calculate interspersion |
| lncGenes | lncRNAs dataset. |
| makeGroups | Make Groups |
| makeMatrix | Make Matrix |
| matrixTests | Matrix Tests |
| MultipleAssignment | Generic form |
| MultipleAssignmentHelper | Binary Operator |
| normalMDS | normal vs. MDS |
| overlapMatrices | Overlap Specific Matrices |
| overlapProbability | Overlap Probability Function |
| overlapTable | Run with default settings. |
| parallelCS | Parallelize ClusterSignificance permutation |
| pcpPermutations | pcpMatrix permute result. |
| pe | Hematological malagnancies ClusterSignificance result. |
| permMatrix | Make permutation matrix |
| sensitivityTest | Sensitivity test |
| sensitivityTestResults | Sensitivity test results dataset. |
| sensSpecPlot | Sensitivity and Specificity Figure |
| specificityTest | Specificity test |
| specificityTestResults | Specificity test results dataset. |
| tsnePlots | tSNE plots |
| visualizeOverlaps | Plot Overlaps |
| zero | Zero overlap dataset. |
| zeroOrHundred | Zero or Hundred Matrix |
