interspersion: Calculate interspersion

In GranderLab/ClusterSignificanceExtras: A package allowing re-creation of all figures in the publication associated with the ClusterSignificance package

Description

Calculates the interspersion between 2 groups. For example, if the the groups are alternating when the points are ordered, the interspersion will be 100 lay within the other groups minimum point and its minimum - 1 point, the result will be 0

Arguments

mat	The mattrix to be checked. Usually a makeMatrix matrix.
groups	A character vector indicating the groups location within the matrix. Can be generated with the makeGroups function. Can only accept 2 groups.
dim	Which dimention of the matrix to check.

Author(s)

Jason Serviss

Examples

mat <- makeMatrix(x=c(0,1), y=c(0,1), dim=2, points=10, seed=15)
groups <- makeGroups(mat, names=c("g1", "g2"))
interspersion(mat, groups, 1)

mat <- makeMatrix(x=c(0,1), y=c(0.9,0.95), dim=2, points=10, seed=15)
groups <- makeGroups(mat, names=c("g1", "g2"))
interspersion(mat, groups, 1)

GranderLab/ClusterSignificanceExtras documentation built on May 6, 2019, 6:30 p.m.