README.md

In GreshamLab/bartools: Tools for Analyzing Barseq Data

bartools

This is an R package for analyzing barseq data. It works with data generated by barnone and bartender

to load in R:

library(devtools)

install_github("GreshamLab/bartools", build_vignettes = TRUE)

to learn how to use functions in bartools() view the vignette by typing:

help(package = 'bartools', help_type = 'html')

info below to be deleted after incorporated into documentation

Input format

Your files should be text flat files, then with a sample sheet. There's two formats we're aiming to support. Both require a sample sheet of the format

File_path,Sample,...

barnone

This is your old school Barseq format. Give me a sample sheet that points at your file and gives me the SampleNames you actually want. It'll give you a big tibble.

bartender

This is that bartender output. It'll handle one or multiple samples per file. Give me a sample sheet that points at your file and gives me the SampleNames you actually want. It'll give you a big tibble.

GreshamLab/bartools documentation built on July 15, 2020, 12:43 a.m.