make_gff_from_snap: Make a gff from a snap gene file

Description Usage Arguments Value Author(s) Examples

View source: R/gff_from_snapgene_features.R

Description

this is a function that takes a csv with features generated from snapgene, and converts it into a gff format when exporting features from snapgene, export all feature data (csv should have 5 columns)

Usage

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make_gff_from_snap(file_path, chromosome, feature_source, output)

Arguments

file_path

the file_path is the name of the csv which has the snapgene feature output

chromosome

is the chromosome the features are on.

feature_source

is what you want in the source column

output

is what you want your output gff to be called (should be .gff)

Value

A file formatted as a gff

Author(s)

Grace Avecilla ga824@nyu.edu

Examples

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## Not run: 
labtools::make_gff_from_snap("~/Projects/Data/SnapBarcodeLibrary1.csv", chromosome = "II", feature_source = "levy_bc", output = "./Bc.gff")

## End(Not run)

GreshamLab/labtools documentation built on Feb. 18, 2022, 12:16 p.m.