tstv_ratio: tstv_ratio
In GreshamLab/vivaldi: Viral Variant Location and Diversity
tstv_ratio R Documentation
tstv_ratio
Description
Inputs a filtered and rearranged vcf dataframe and calculates the transition/transversion ratio
Usage
tstv_ratio(df, genome_size)
Arguments
df
The filtered and rearranged variant dataframe
genome_size
Size of whole genome being used
Value
A dataframe containing the calculated transition/transversion ratio (R or basic_tstv)
Examples
tstv_ratio(example_filtered_SNV_df, 13000)
GreshamLab/vivaldi documentation built on Feb. 20, 2024, 12:32 a.m.
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| tstv_ratio | R Documentation |
tstv_ratio
Description
Inputs a filtered and rearranged vcf dataframe and calculates the transition/transversion ratio
Usage
tstv_ratio(df, genome_size)
Arguments
df |
The filtered and rearranged variant dataframe |
genome_size |
Size of whole genome being used |
Value
A dataframe containing the calculated transition/transversion ratio (R or basic_tstv)
Examples
tstv_ratio(example_filtered_SNV_df, 13000)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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