Files in GrosseLab/BGSC
Bayesian gene selection criterion (BGSC) approach
.Rbuildignore
.gitignore
BGSC.Rproj
DESCRIPTION
LICENSE
NAMESPACE
PaperPlot/DensityPlot_TPR.pdf
PaperPlot/Fig1.pdf
PaperPlot/Fig2.pdf
PaperPlot/Fig3.pdf
PaperPlot/Fig4.pdf
PaperPlot/Fig5_DensityPlot_TPR.pdf
PaperPlot/Fig6_Microary_qPCR_barplot.pdf
PaperPlot/Microary_mean_Microary_qPCR__barplot.pdf
PaperPlot/Microary_mean_barplot.pdf
PaperPlot/Microary_qPCR_barplot.pdf
PaperPlot/Poster-ME19_Weinholdt_EGFR.pdf
PaperPlot/Schematic_ExpressionPattern.pdf
PaperPlot/Schematic_ExpressionPattern_it.pdf
PaperPlot/groups_2018.pdf
PaperPlot/qPCR_ddCT_log2FC_SF767_LNZ308_barplot.pdf
PredectionResult/PredectionResultClass_a.csv
PredectionResult/PredectionResultClass_b.csv
PredectionResult/PredectionResultClass_c.csv
PredectionResult/PredectionResultClass_d.csv
R/BGSC.R
R/VennFunction.R
R/data.R
README.md
ReproducibleScript.Rmd
ReproducibleScript.md
ReproducibleScript_files/figure-markdown_github/Density-1.png
ReproducibleScript_files/figure-markdown_github/DensityQPCR-1.png
ReproducibleScript_files/figure-markdown_github/PostClass-1.png
ReproducibleScript_files/figure-markdown_github/Posterior-1.png
ReproducibleScript_files/figure-markdown_github/barplot FC-1.png
ReproducibleScript_files/figure-markdown_github/barplot exp data -1.png
ReproducibleScript_files/figure-markdown_github/barplotExpData -1.png
ReproducibleScript_files/figure-markdown_github/barplotFC-1.png
ReproducibleScript_files/figure-markdown_github/group c example-1.png
ReproducibleScript_files/figure-markdown_github/group c exp genes plot-1.png
ReproducibleScript_files/figure-markdown_github/groupC_ExpGenesPlot-1.png
ReproducibleScript_files/figure-markdown_github/schematic gr-1.png
data/ExpData.rda
data/Illumina_to_REFSEQ_MRNA.rda
data/qPCR_SF767.rda
data/qPCR_SF767_LNZ308.rda
inst/extdata/ChartReportSig_BIOCARTA.pdf
inst/extdata/ChartReportSig_GOTERM_BP_FAT.csv
inst/extdata/ChartReportSig_GOTERM_BP_FAT.pdf
inst/extdata/ChartReportSig_GOTERM_CC_FAT.csv
inst/extdata/ChartReportSig_GOTERM_CC_FAT.pdf
inst/extdata/ChartReportSig_GOTERM_MF_FAT.csv
inst/extdata/ChartReportSig_GOTERM_MF_FAT.pdf
inst/extdata/ChartReportSig_INTERPRO.csv
inst/extdata/ChartReportSig_INTERPRO.pdf
inst/extdata/ChartReportSig_KEGG_PATHWAY.csv
inst/extdata/ChartReportSig_KEGG_PATHWAY.pdf
inst/extdata/ChartReportSig_REACTOME_PATHWAY.csv
inst/extdata/ChartReportSig_REACTOME_PATHWAY.pdf
inst/extdata/ChartReportSig_UP_SEQ_FEATURE.csv
inst/extdata/ChartReportSig_UP_SEQ_FEATURE.pdf
inst/extdata/Filtering_REFSEQ_MRNA_a.txt
inst/extdata/Filtering_REFSEQ_MRNA_a_chartReport.txt
inst/extdata/Filtering_REFSEQ_MRNA_b.txt
inst/extdata/Filtering_REFSEQ_MRNA_b_chartReport.txt
inst/extdata/Filtering_REFSEQ_MRNA_c.txt
inst/extdata/Filtering_REFSEQ_MRNA_c_chartReport.txt
inst/extdata/Filtering_REFSEQ_MRNA_d.txt
inst/extdata/Filtering_REFSEQ_MRNA_d_chartReport.txt
inst/extdata/Filtering_Symbole_a.txt
inst/extdata/Filtering_Symbole_b.txt
inst/extdata/Filtering_Symbole_c.txt
inst/extdata/Filtering_Symbole_d.txt
inst/extdata/Filtering_logFC_a.csv
inst/extdata/Filtering_logFC_b.csv
inst/extdata/Filtering_logFC_c.csv
inst/extdata/Filtering_logFC_d.csv
inst/extdata/MyData.csv.numbers
inst/extdata/RawQPCR.csv
man/Density.NV.fit.plot.Rd
man/ExpData.Rd
man/Illumina_to_REFSEQ_MRNA.Rd
man/InformationCriterion.Rd
man/REFSEQ_MRNA_to_Illm.Rd
man/comparativeMethod_qPCR.EGF.log2FC.Rd
man/comparativeMethod_qPCR.RNAi.log2FC.Rd
man/comparativeMethod_qPCR.analysis.Rd
man/f.input.list.All.subVenn.Rd
man/f.input.list.Rd
man/f.input2.Rd
man/f.input3.Rd
man/f.input4.Rd
man/f.input5.Rd
man/get.IC.Rd
man/get.Lset.Rd
man/get.Posterior.Rd
man/get.gene.group.Rd
man/get.log2Mean.and.log2FC.Rd
man/intersect3.Rd
man/intersect4.Rd
man/intersect5.Rd
man/logLikelihoodOfnormData.Rd
man/make.enrichment.data.Rd
man/make.plot.data.FC.Ill.qPCR.Rd
man/make.plot.data.exp.Ill.qPCR.Rd
man/maxIndex.Rd
man/minIndex.Rd
man/normalizeExpData.Rd
man/qPCR_SF767.Rd
man/qPCR_SF767_LNZ308.Rd
man/thememapBarplot.Rd
man/union3.Rd
man/union4.Rd
man/union5.Rd
perl/CallDAVID.txt
perl/chartReport_modify2.pl
rawdata/ControlProbeProfile_SF767-1.txt.gz
rawdata/Einzelanalyse_nonorm_nobkgd_SF767-1.txt.gz
rawdata/qPCR_SF767.csv
rawdata/qPCR_SF767_LNZ308.csv
rawdata/supplementary/RNA_Daten_zur_SF767_CCND1.csv
rawdata/supplementary/RNA_Daten_zur_SF767_EGFRall.csv
rawdata/supplementary/RNA_Daten_zur_SF767_EGFRv1.csv
rawdata/supplementary/RNA_Daten_zur_SF767_EGFRv4.csv
rawdata/supplementary/RNA_Daten_zur_SF767_G0G1.csv
rawdata/supplementary/RNA_Daten_zur_SF767_GAPDH.csv
rawdata/supplementary/RNA_Daten_zur_SF767_MMP2.csv
rawdata/supplementary/RNA_Daten_zur_SF767_SVV.csv
rawdata/supplementary/RNA_Daten_zur_SF767_proliferation48H.csv
scripts/MAIN.R
scripts/supplementary.R
