Density.NV.fit.plot: Density plot for NV fit

Description Usage Arguments Value Author(s)

View source: R/BGSC.R

Description

Density plot for NV fit

Usage

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Density.NV.fit.plot(id, normData, ALL.MUs, ALL.VARs, useGroup = NA,
  DOplot = FALSE, basesize = 14, GrAblack = TRUE, onlySYMBOL = FALSE)

Arguments

id

is a Illuminan id

normData

is the normData data object

ALL.MUs

matrix with all means from logLikelihoodOfnormData()

ALL.VARs

matrix with all variances from logLikelihoodOfnormData()

useGroup

if set to a group (eg. "a","b","c" or "d") the row is colored

DOplot

if TRUE plot is printed

basesize

size of font

GrAblack

if TRUE coloring group 'a' in black because we do not use a Indicator variable

onlySYMBOL

if TRUE title is only gene SYMBOL

Value

a list with mean , std.err , log2FC and std.err of log2FC

Author(s)

Claus Weinholdt


GrosseLab/BGSC documentation built on Sept. 4, 2019, 2:36 p.m.