In GuangchuangYu/ReactomePA: Reactome Pathway Analysis

knitr::opts_chunk$set(tidy = FALSE,
                      warning = FALSE,
                      message = FALSE)

CRANpkg <- function (pkg) {
    cran <- "https://CRAN.R-project.org/package"
    fmt <- "[%s](%s=%s)"
    sprintf(fmt, pkg, cran, pkg)
}

Biocpkg <- function (pkg) {
    sprintf("[%s](http://bioconductor.org/packages/%s)", pkg, pkg)
}

library(org.Hs.eg.db)
library(DOSE)
library(ReactomePA)

Vignette

Please go to https://yulab-smu.top/biomedical-knowledge-mining-book/ for the full vignette.

Citation

If you use r Biocpkg("ReactomePA") [@yu_reactomepa_2016] in published research, please cite:

G Yu, QY He^*^. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems 2016, 12(2):477-479. doi: 10.1039/C5MB00663E