gseaplot: gseaplot

In GuangchuangYu/enrichplot: Visualization of Functional Enrichment Result

gseaplot

Description

visualize analyzing result of GSEA

Usage

gseaplot(x, geneSetID, by = "all", title = "", ...)

## S4 method for signature 'gseaResult'
gseaplot(
  x,
  geneSetID,
  by = "all",
  title = "",
  color = "black",
  color.line = "green",
  color.vline = "#FA5860",
  ...
)

gseaplot.gseaResult(
  x,
  geneSetID,
  by = "all",
  title = "",
  color = "black",
  color.line = "green",
  color.vline = "#FA5860",
  ...
)

Arguments

x	object of gsea result
geneSetID	geneSet ID
by	one of "runningScore" or "position"
title	plot title
...	additional parameters
color	color of line segments
color.line	color of running enrichment score line
color.vline	color of vertical line which indicating the maximum/minimal running enrichment score

Details

plotting function for gseaResult

Value

ggplot2 object

ggplot2 object

Author(s)

Guangchuang Yu

Examples

library(DOSE)
data(geneList)
x <- gseDO(geneList)
gseaplot(x, geneSetID=1)

GuangchuangYu/enrichplot documentation built on Nov. 8, 2024, 11:24 a.m.