generateGapFile: generateGapFile
In GuangchuangYu/skleid: State Key Lab of Emerging Infectious Diseases
Description
Usage
Arguments
Author(s)
Description
generating gap file
Usage
1
2
generateGapFile(out.folder = "output", ref.folder = "Ref", read.fileName,
sample.size = 200, gap.file = "gaps.txt")
Arguments
out.folder
output folder of autoReport, that contains consensus sequences,
or summary.csv from summarize output
ref.folder
reference folder
read.fileName
list of file names of read file
sample.size
sample size
gap.file
output gap file name
Author(s)
ygc
GuangchuangYu/skleid documentation built on May 6, 2019, 9:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Author(s)
Description
generating gap file
Usage
1 2 | generateGapFile(out.folder = "output", ref.folder = "Ref", read.fileName,
sample.size = 200, gap.file = "gaps.txt")
|
Arguments
out.folder |
output folder of autoReport, that contains consensus sequences, or summary.csv from summarize output |
ref.folder |
reference folder |
read.fileName |
list of file names of read file |
sample.size |
sample size |
gap.file |
output gap file name |
Author(s)
ygc
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.