Files in HCBravoLab/metagenomeFeatures
Exploration of marker-gene sequence taxonomic annotations
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/DNAStringSetOrNull-class.R
R/gg13.8_85MgDb.R
R/mgDb-class.R
R/mgDb-taxa_accessors.R
R/mgDb_method_annotateFeatures.R
R/mgDb_method_select.R
R/mgFeatures-class.R
R/mock_mgF.R
R/mock_query_df.R
R/phylo-class.R
R/qiita_study_94_gg_ids.R
R/utils.R
README.md
appveyor.yml
data/datalist
data/mock_mgF.RData
data/mock_query_df.rdata
data/qiita_study_94_gg_ids.rda
inst/extdata/229_otu_table.biom
inst/extdata/229_sample_data.tsv
inst/extdata/2301_mapping_file.txt
inst/extdata/6692_analysis_dt-16S_r-1_c-3.biom
inst/extdata/genus_keys.RData
inst/extdata/gg13.8_85.sqlite
inst/extdata/gg13.8_85.tre
inst/extdata/gg13.8_85_metadata.RData
inst/extdata/mock_counts.csv
inst/extdata/mock_sample_data.csv
inst/extdata/qiita_study_94_gg_ids.RDS
inst/manuscript/manuscript_supplemental-initial-submission.Rmd
inst/manuscript/manuscript_supplemental-initial-submission.pdf
inst/manuscript/manuscript_supplemental.Rmd
inst/manuscript/manuscript_supplemental.bib
inst/scripts/make_greengenes13.8_85.R
inst/scripts/make_greengenes13.8_97.R
inst/scripts/make_mock_mgF.R
inst/scripts/make_mock_query_df.R
inst/scripts/make_qiita_study_94_gg_ids.R
inst/scripts/make_qitta_study_94_sample_data.R
inst/scripts/make_testMgDb.R
man/MgDb-accessor.Rd
man/MgDb-class.Rd
man/MgDb-methods.Rd
man/annotateFeatures-MgDb-method.Rd
man/get_gg13.8_85MgDb.Rd
man/make_mgdb_sqlite.Rd
man/mgFeatures-accessors.Rd
man/mgFeatures-class.Rd
man/mgFeatures-methods.Rd
man/mock_mgF.Rd
man/mock_query_df.Rd
man/newMgDb.Rd
man/qiita_study_94_gg_ids.Rd
man/reexports.Rd
man/select-MgDb-method.Rd
man/taxa_.Rd
metagenomeFeatures.Rproj
tests/test_db.sqlite3
tests/test_seq.rds
tests/test_taxa.sqlite3
tests/test_tree.rds
tests/testthat.R
tests/testthat/helper-MgDb.R
tests/testthat/test_agg_tax.R
tests/testthat/test_mdDb-annotateFeatures.R
tests/testthat/test_mgDb-class.R
tests/testthat/test_mgDb-select.R
tests/testthat/test_mgFeatures-class.R
vignettes/.gitignore
vignettes/MgDb_and_mgFeatures_classes.Rmd
vignettes/database-explore.Rmd
vignettes/retrieve-feature-data.Rmd
