mgFeatures-class: Class mgFeature
In HCBravoLab/metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations
Description
Usage
Arguments
Value
Examples
Description
Class defines taxonomic annotation and reference sequence data for
classified OTUs. The class indirectly extends the DataFrame
class with a slot with a subset of the reference database sequences and
phylogenetic tree for taxonomically classified OTUs, along with an additional
slot for metadata including information on the database source.
Usage
1
mgFeatures(taxa = data.frame(), tree = NULL, seq = NULL, metadata)
Arguments
taxa
a DataFrame-class or object that can be coerced into a DataFrame
tree
a phylo-class object with phylogenetic tree
seq
DNAStringSet-object with feature sequences
metadata
a list
Value
mgFeature class object
mgFeatures-class object
Examples
1
2
data(mock_mgF)
mgFeatures(taxa = data.frame(), metadata = list())
HCBravoLab/metagenomeFeatures documentation built on Feb. 14, 2020, 12:42 a.m.
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Description Usage Arguments Value Examples
Description
Class defines taxonomic annotation and reference sequence data for classified OTUs. The class indirectly extends the DataFrame class with a slot with a subset of the reference database sequences and phylogenetic tree for taxonomically classified OTUs, along with an additional slot for metadata including information on the database source.
Usage
1 | mgFeatures(taxa = data.frame(), tree = NULL, seq = NULL, metadata)
|
Arguments
taxa |
a DataFrame-class or object that can be coerced into a DataFrame |
tree |
a phylo-class object with phylogenetic tree |
seq |
DNAStringSet-object with feature sequences |
metadata |
a list |
Value
mgFeature class object
mgFeatures-class object
Examples
1 2 | data(mock_mgF)
mgFeatures(taxa = data.frame(), metadata = list())
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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