mgFeatures-class: Class mgFeature

Description Usage Arguments Value Examples

Description

Class defines taxonomic annotation and reference sequence data for classified OTUs. The class indirectly extends the DataFrame class with a slot with a subset of the reference database sequences and phylogenetic tree for taxonomically classified OTUs, along with an additional slot for metadata including information on the database source.

Usage

1
mgFeatures(taxa = data.frame(), tree = NULL, seq = NULL, metadata)

Arguments

taxa

a DataFrame-class or object that can be coerced into a DataFrame

tree

a phylo-class object with phylogenetic tree

seq

DNAStringSet-object with feature sequences

metadata

a list

Value

mgFeature class object

mgFeatures-class object

Examples

1
2
data(mock_mgF)
mgFeatures(taxa = data.frame(), metadata = list())

HCBravoLab/metagenomeFeatures documentation built on Feb. 14, 2020, 12:42 a.m.