makeMicrobiomeExperimentFromBiom: coerce 'biom' into a 'MicrobiomeExperiment'

Description Usage Arguments Value Examples

Description

coerce biom into a MicrobiomeExperiment

Usage

1

Arguments

obj

object of type biom

Value

An object of class MicrobiomeExperiment

Examples

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if(requireNameSpace("biomformat")) {
  rich_dense_file  = system.file("extdata", "rich_dense_otu_table.biom", package = "biomformat")
  x1 <- read_biom(rich_dense_file)
  as(x1, "MicrobiomeExperiment")
}

HCBravoLab/metagenomeSE documentation built on May 17, 2019, 6:19 p.m.