Description Usage Arguments Value
ode.list.offOAT
Calculate the change of population in cells of PWID population but off OAT by the ODE model
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | ode.list.offOAT(
x,
x.oat,
beta_o,
beta_s,
gamma,
rho,
ws,
wp,
mu_mat,
mo,
eta,
psi,
psi.p,
theta.ai,
theta.ad,
phi,
v2,
v3,
alpha,
alpha.re,
theta.1,
theta.2,
theta.t12,
theta.t13,
theta.t21,
theta.t23,
theta.t31,
theta.t32,
theta.t1O,
theta.t2O,
theta.t3O,
oat.e,
oat.q,
rho.m
)
|
x |
a vector containing the number of individuals off OAT x = c(S1,S2,Sp,Ia,I1,I2,I3,Iap,Ip,Da,D1,D2,D3,T1,T2,T3,O1,O2,O3) |
x.oat |
a vector containing the number of individuals on OAT |
rho |
the entry rate (assume the same for all groups) |
mu_mat |
maturation rates (age>65) |
mo |
mortality rates for 19 states |
eta |
PrEP entry rate |
psi |
screening rates for susceptible or infected |
psi.p |
screening rates for Iap (acute HIV on PrEP) |
theta.ai |
transition rate from acute states (Ia) to chronic state (CD4>=500; I1) |
theta.ad |
transition rate from acute states (Da) to chronic state (CD4>=500; D1) |
phi |
% infected of people receiving ART once diagnosed |
v2, v3 |
symptom-based case finding rate for I2 and I3, respectively |
alpha |
ART initiation rate for D1,D2, and D3 |
alpha.re |
ART re-initiation rate for o1,O2, and O3 |
theta.1 |
HIV disease progression rate for those not on ART, from I1/D1 to I2/D2 |
theta.2 |
HIV disease progression rate for those not on ART, from I2/D2 to I3/D3 |
oat.e |
OAT entry rate |
oat.q |
OAT dropout rate |
lambda |
the sufficient contact rate |
lambda.p |
the sufficient contact rate for those on PrEP. |
1/ws |
average duration uninfected individuals in compartment S remain identified after screening |
1/wp |
average duration uninfected individuals in compartment Sp remain on PrEP |
psi.pr |
entry rate for PrEP |
theta.t |
transition probabilities for those on ART |
theta.o |
ART dropout probability from states T1,T2,T3 |
HIV diagnoses, incidence and deaths for PWID off OAT
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