Man pages for HISKP-LQCD/hadron
package to extract hadronic quantities
| add.cf | Arithmetically adds two correlation functions |
| addConfIndex2cf | add a configuration index to an 'cf' object |
| add.raw_cf | add two 'raw_cf' objects |
| addStat.cf | Combine statistics of two cf objects |
| addStat.raw_cf | Extend statistics of an existing 'raw_cf' container |
| alpha_s | compute alpha strong at given scale |
| analysis_gradient_flow | analysis_gradient_flow |
| analysis_online | analysis_online |
| averx | Compute <x> From Bare Data |
| avg.cbt.cf | average close-by-times in a correlation function |
| avg.ls.cf | Average local-smeared and smeared-local correlators |
| block.raw_cf | Block average correlation function data |
| bootstrap.analysis | Performs a Bootstrap with Blocking Analysis of a Timeseries |
| bootstrap.cf | bootstrap a set of correlation functions |
| bootstrap.effectivemass | Computes effective masses with bootstrapping errors |
| bootstrap.gevp | perform a bootstrap analysis of a GEVP |
| bootstrap.hankel | GEVP method based on Hankel matrices. Experimental. |
| bootstrap.meanerror | Compute the bootstrap error of the mean |
| bootstrap.nlsfit | Bootstrap a non-linear least-squares fit |
| boot_ts_array | Copy of boot:::ts.array |
| c.cf | Concatenate correlation function objects |
| cdh | finite size corrections a la Colangelo, Duerr, Haefeli |
| cdhnew | finite size corrections a la Colangelo, Duerr, Haefeli, but... |
| CExp | Cosh Or Sinh Build Out Of Two Exps |
| cf | Correlation function container |
| cf_boot | Bootstrapped CF mixin constructor |
| cf_meta | CF metadata mixin constructor |
| cf_orig | Original data CF mixin constructor |
| cf_principal_correlator | Principal correlator CF mixin constructor |
| cf_shifted | Shifted CF mixin constructor |
| cf_smeared | Smeared CF mixin constructor |
| cf_subtracted | Subtracted CF mixin constructor |
| cf_weighted | Weighted CF mixin constructor |
| computeacf | Computes The ACF and Integrated AC Time |
| computeDisc | computes a disconnected correlation function from loops |
| computefps | Computes the pseudoscalar decay constant for the twisted mass... |
| computefpsOS | Computes the pseudoscalar decay constant for the Osterwalder... |
| compute.plotlims | compute.plotlims |
| concat.cf | Concatenate two correlation function objects |
| concat.raw_cf | Concatenate two 'raw_cf' correlation function objects |
| construct_onlinemeas_rundir | Construct a run directory string for analysis_online |
| convert2cf | convert data into a 'cf' object |
| correlatormatrix | Sample correlator matrix |
| c.raw_cf | Concatenate 'raw_cf' correlation function objects |
| cyprus_make_key_deriv | HDF5 key for Cyprus CalcLoops derivative-type loops |
| cyprus_make_key_scalar | HDF5 key for Cyprus CalcLoops scalar-type loops |
| cyprus_read_loops | read HDF5 loop files in the Cyprus CalcLoops format |
| disc_3pt | disconnected contribution to current insertion three-point... |
| dispersion_relation | Continuum dispersion relation for CM to lattice frame |
| dot-cf | Arithmetically subtract correlators |
| dot-raw_cf | add two 'raw_cf' objects |
| effectivemass.cf | Computes effective mass values for a correlation function |
| escapeLatexSpecials | Escape special LaTeX characters for use in LaTeX labels |
| extract.loop | Extract a single loop from an object of class 'cmiloop' |
| extract.obs | Extract One or More Gamma Combinations from am CMI Correlator |
| extractSingleCor.cf | extract one single correlator object as 'cf' object from a... |
| fit.cosh | Fits a sum of several 'cosh'-functions |
| fit.effectivemass | Fits a constant to effective mass data |
| fit.plateau2cf | fits a plateau to an object of class 'cf' |
| foldr1 | Folds the non-empty list with the binary function |
| fs.qcotdelta | Finite Size Corrections to qcotdelta for I=2 pipi near... |
| g1 | g1 |
| getorderedfilelist | Creates an ordered filelist from a basename and a path |
| get_plotdata_raw_cf | extract data from 'raw_cf' in format convenient to plot |
| gevp | solve GEVP for correlator matrix |
| gevp2amplitude | Extracts physical amplitudes from a GEVP |
| gevp2cf | Extracts a principle correlator from a GEVEP |
| gevp.hankel | GEVP method based on Hankel matrices. Experimental. |
| gm | List of arrays of gamma structures |
| gm_mu | Accessor function for 'gm' |
| h5_get_dataset | get dataset from HDF5 file |
| h5_names_exist | check if group names exist in HDF5 file |
| hadron-internal | Internal Hadron Functions |
| hadron-package | The Hadron Package |
| idx_matrix.raw_cf | Construct the tensor index set for the entire raw correlator |
| int_idx_matrix.raw_cf | Construct tensor index set for the internal degrees of... |
| invalidate.samples.cf | Invalidate samples |
| invcosh | numerically invert the cosh function for the mass |
| invertCovMatrix | Inverts the covariance matrix for noisy data |
| is.cf | Checks whether an object is a cf |
| is_empty.cf | Checks whether the cf object contains no data |
| is_empty.raw_cf | check if an obect is of class 'raw_cf' and empty otherwise |
| is.raw_cf | check if an object is of class 'raw_cf' |
| jackknifeafterboot | jackknife-after-bootstrap analysis |
| jackknife.cf | jackknife a set of correlation functions |
| jackknife_cov | jackknife_cov |
| jackknife_error | Estimates error from jackknife samples |
| loop_2pt | compute two-point correlation function between quark loops |
| loop_spin_project | spin projection of quark loop data |
| loop_stochav | average over stochastic samples of loop |
| loop_vev_subtract | subtract vev from loop data |
| LuescherZeta | Computes Lueschers Zeta Function |
| make_parind | Create a parameter index matrix for 'matrixfit' |
| make_parlist | Create a parameter list for 'matrixfit' |
| matrixfit | Routine For A Factorising Matrix Fit |
| matrixModel | Correlator matrix model. |
| mul.cf | Arithmetically scale a correlator |
| mul.raw_cf | scale 'raw_cf' data |
| NParticleModel | Model for the n particle correlator fit |
| old_removeTemporal.cf | Remove temporal states |
| onlinemeas | determines pion mass and pcac mass from online measured... |
| overview_plot_raw_cf | create convenient overview plots for a 'raw_cf' object |
| parametric.bootstrap | Parametric bootstrap |
| parametric.bootstrap.cov | Parametric bootstrap with covariance |
| parametric.nlsfit | NLS fit with parametric bootstrap |
| parametric.nlsfit.cov | parametric.nlsfit.cov |
| pcac | Computes the pcac mass |
| pcacfit | pcacfit |
| pcModel | Principal correlator two state model. |
| pion | Fit Pseudo Scalar Sector |
| plaq.sample | Sample plaquette time series |
| plot.averx | Plots averx data |
| plot.b1fit | plot.b1fit |
| plot.bootstrapfit | Plot a bootstrap NLS fit |
| plot.cf | Plot a correlation function |
| plot.cfit | plot.c1fit |
| plot.effectivemass | plot.effectivemass |
| plot.effmass | plot.effmass |
| plot_eigenvalue_timeseries | plot_eigenvalue_timeseries |
| plot.gevp.amplitude | plot.gevp.amplitude |
| plot.hadronacf | plot.hadronacf |
| plothlinewitherror | plothlinewitherror |
| plot.massfit | plot.massfit |
| plot.matrixfit | Plot a matrixfit |
| plot.ofit | plot.ofit |
| plot.outputdata | Plot Command For Class Ouputdata |
| plot.pionff | plot.pionff |
| plot.pionfit | plot.pionfit |
| plot.raw_cf | plot all correlators in 'raw_cf' object |
| plot.rhofit | plot.rhofit |
| plot_timeseries | plot_timeseries |
| plot.uwerr | Plot Command For Class UWerr |
| plotwitherror | Plot Command For XY Plots With Error Bars |
| plus-.cf | Arithmetically add correlators |
| plus-.raw_cf | add two 'raw_cf' objects |
| print.averx | print.averx |
| print.bootstrapfit | Print a bootstrap NLS fit |
| print.cf | print.cf |
| print.effectivemassfit | print.effectivemassfit |
| print.ofit | print.ofit |
| print.pionfit | pionfit print |
| print.raw_cf | Print summary of data contained in 'raw_cf' container |
| proton | proton |
| pscor.sample | Sample pseudoscalar correlator |
| raw_cf | Container for raw correlation functions |
| raw_cf_data | Original data mixin constructor for 'raw_cf' |
| raw_cf_meta | 'raw_cf' metadata mixin constructor |
| raw_cf_to_cf | Extract a particular internal component of a 'raw_cf' into a... |
| readbinarycf | read correlation function from binary files |
| readbinarydisc | read disconnected loops from binary files |
| readbinarysamples | Read binary correlation function by sample |
| readcmidatafiles | Read Single Data Files in Chris Michael Format |
| readcmidisc | reads disconnected loops in cmi format |
| readgradflow | Read Gradient Flow Output Files in tmLQCD format |
| readhlcor | readhlcor |
| readnissatextcf | reader for Nissa text format correlation functions |
| readoutputdata | Read Data In output.data Format of tmLQCD |
| readtextcf | Read correlator data from single file |
| restore_seed | Restore random number generator state |
| samplecf | Sample cf data |
| shift.cf | shift a correlation function by 'places' time-slices |
| shift.raw_cf | shift a 'raw_cf' correlation function by 'places' time-slices |
| simple.nlsfit | NLS fit with without bootstrap |
| slash-.cf | Arithmetically divide correlators |
| slash-.raw_cf | divide two 'raw_cf' objects |
| string2error | string2error |
| subtract.excitedstates | Substract excited states. |
| summary.averx | summary.averx |
| summary.bootstrapfit | Summarize a bootstrap NLS fit |
| summary.cf | summary.cf |
| summary.effectivemass | summary.effectivemass |
| summary.effectivemassfit | summary.effectivemassfit |
| summary.gevp.amplitude | summary.gevp.amplitude |
| summary.hadronacf | summary.hadronacf |
| summary.matrixfit | summary.matrixfit |
| summary.ofit | summary.ofit |
| summary.pionff | summary.pionff |
| summary.pionfit | pionfit summary |
| summary.raw_cf | Print summary of data contained in 'raw_cf' container |
| summary.uwerr | summary.uwerr |
| swap_seed | Save random number generator state |
| symmetrise.cf | symmetrise.cf |
| takeTimeDiff.cf | Take time difference |
| tex.catwitherror | paste a number with error in tex-ready format |
| tikzutils | Convenience Functions for 'tikzDevice' |
| times-.raw_cf | multiply two 'raw_cf' objects |
| uwerr | Time Series Analysis With Gamma Method |
| uwerr.cf | uwerr.cf |
| uwerr.raw_cf | Gamma method analysis on all time-slices in a 'raw_cf' object |
| variational | variational analysis of a correlator matrix |
| zeta_zp | Computes the running of Z_P from scale mu0 to scale mu2 |
