Man pages for HISKP-LQCD/hadron
package to extract hadronic quantities

add.cfArithmetically adds two correlation functions
addConfIndex2cfadd a configuration index to an 'cf' object
add.raw_cfadd two 'raw_cf' objects
addStat.cfCombine statistics of two cf objects
addStat.raw_cfExtend statistics of an existing 'raw_cf' container
alpha_scompute alpha strong at given scale
analysis_gradient_flowanalysis_gradient_flow
analysis_onlineanalysis_online
averxCompute <x> From Bare Data
avg.cbt.cfaverage close-by-times in a correlation function
avg.ls.cfAverage local-smeared and smeared-local correlators
block.raw_cfBlock average correlation function data
bootstrap.analysisPerforms a Bootstrap with Blocking Analysis of a Timeseries
bootstrap.cfbootstrap a set of correlation functions
bootstrap.effectivemassComputes effective masses with bootstrapping errors
bootstrap.gevpperform a bootstrap analysis of a GEVP
bootstrap.hankelGEVP method based on Hankel matrices. Experimental.
bootstrap.meanerrorCompute the bootstrap error of the mean
bootstrap.nlsfitBootstrap a non-linear least-squares fit
boot_ts_arrayCopy of boot:::ts.array
c.cfConcatenate correlation function objects
cdhfinite size corrections a la Colangelo, Duerr, Haefeli
cdhnewfinite size corrections a la Colangelo, Duerr, Haefeli, but...
CExpCosh Or Sinh Build Out Of Two Exps
cfCorrelation function container
cf_bootBootstrapped CF mixin constructor
cf_metaCF metadata mixin constructor
cf_origOriginal data CF mixin constructor
cf_principal_correlatorPrincipal correlator CF mixin constructor
cf_shiftedShifted CF mixin constructor
cf_smearedSmeared CF mixin constructor
cf_subtractedSubtracted CF mixin constructor
cf_weightedWeighted CF mixin constructor
computeacfComputes The ACF and Integrated AC Time
computeDisccomputes a disconnected correlation function from loops
computefpsComputes the pseudoscalar decay constant for the twisted mass...
computefpsOSComputes the pseudoscalar decay constant for the Osterwalder...
compute.plotlimscompute.plotlims
concat.cfConcatenate two correlation function objects
concat.raw_cfConcatenate two 'raw_cf' correlation function objects
construct_onlinemeas_rundirConstruct a run directory string for analysis_online
convert2cfconvert data into a 'cf' object
correlatormatrixSample correlator matrix
c.raw_cfConcatenate 'raw_cf' correlation function objects
cyprus_make_key_derivHDF5 key for Cyprus CalcLoops derivative-type loops
cyprus_make_key_scalarHDF5 key for Cyprus CalcLoops scalar-type loops
cyprus_read_loopsread HDF5 loop files in the Cyprus CalcLoops format
disc_3ptdisconnected contribution to current insertion three-point...
dispersion_relationContinuum dispersion relation for CM to lattice frame
dot-cfArithmetically subtract correlators
dot-raw_cfadd two 'raw_cf' objects
effectivemass.cfComputes effective mass values for a correlation function
escapeLatexSpecialsEscape special LaTeX characters for use in LaTeX labels
extract.loopExtract a single loop from an object of class 'cmiloop'
extract.obsExtract One or More Gamma Combinations from am CMI Correlator
extractSingleCor.cfextract one single correlator object as 'cf' object from a...
fit.coshFits a sum of several 'cosh'-functions
fit.effectivemassFits a constant to effective mass data
fit.plateau2cffits a plateau to an object of class 'cf'
foldr1Folds the non-empty list with the binary function
fs.qcotdeltaFinite Size Corrections to qcotdelta for I=2 pipi near...
g1g1
getorderedfilelistCreates an ordered filelist from a basename and a path
get_plotdata_raw_cfextract data from 'raw_cf' in format convenient to plot
gevpsolve GEVP for correlator matrix
gevp2amplitudeExtracts physical amplitudes from a GEVP
gevp2cfExtracts a principle correlator from a GEVEP
gevp.hankelGEVP method based on Hankel matrices. Experimental.
gmList of arrays of gamma structures
gm_muAccessor function for 'gm'
h5_get_datasetget dataset from HDF5 file
h5_names_existcheck if group names exist in HDF5 file
hadron-internalInternal Hadron Functions
hadron-packageThe Hadron Package
idx_matrix.raw_cfConstruct the tensor index set for the entire raw correlator
int_idx_matrix.raw_cfConstruct tensor index set for the internal degrees of...
invalidate.samples.cfInvalidate samples
invcoshnumerically invert the cosh function for the mass
invertCovMatrixInverts the covariance matrix for noisy data
is.cfChecks whether an object is a cf
is_empty.cfChecks whether the cf object contains no data
is_empty.raw_cfcheck if an obect is of class 'raw_cf' and empty otherwise
is.raw_cfcheck if an object is of class 'raw_cf'
jackknifeafterbootjackknife-after-bootstrap analysis
jackknife.cfjackknife a set of correlation functions
jackknife_covjackknife_cov
jackknife_errorEstimates error from jackknife samples
loop_2ptcompute two-point correlation function between quark loops
loop_spin_projectspin projection of quark loop data
loop_stochavaverage over stochastic samples of loop
loop_vev_subtractsubtract vev from loop data
LuescherZetaComputes Lueschers Zeta Function
make_parindCreate a parameter index matrix for 'matrixfit'
make_parlistCreate a parameter list for 'matrixfit'
matrixfitRoutine For A Factorising Matrix Fit
matrixModelCorrelator matrix model.
mul.cfArithmetically scale a correlator
mul.raw_cfscale 'raw_cf' data
NParticleModelModel for the n particle correlator fit
old_removeTemporal.cfRemove temporal states
onlinemeasdetermines pion mass and pcac mass from online measured...
overview_plot_raw_cfcreate convenient overview plots for a 'raw_cf' object
parametric.bootstrapParametric bootstrap
parametric.bootstrap.covParametric bootstrap with covariance
parametric.nlsfitNLS fit with parametric bootstrap
parametric.nlsfit.covparametric.nlsfit.cov
pcacComputes the pcac mass
pcacfitpcacfit
pcModelPrincipal correlator two state model.
pionFit Pseudo Scalar Sector
plaq.sampleSample plaquette time series
plot.averxPlots averx data
plot.b1fitplot.b1fit
plot.bootstrapfitPlot a bootstrap NLS fit
plot.cfPlot a correlation function
plot.cfitplot.c1fit
plot.effectivemassplot.effectivemass
plot.effmassplot.effmass
plot_eigenvalue_timeseriesplot_eigenvalue_timeseries
plot.gevp.amplitudeplot.gevp.amplitude
plot.hadronacfplot.hadronacf
plothlinewitherrorplothlinewitherror
plot.massfitplot.massfit
plot.matrixfitPlot a matrixfit
plot.ofitplot.ofit
plot.outputdataPlot Command For Class Ouputdata
plot.pionffplot.pionff
plot.pionfitplot.pionfit
plot.raw_cfplot all correlators in 'raw_cf' object
plot.rhofitplot.rhofit
plot_timeseriesplot_timeseries
plot.uwerrPlot Command For Class UWerr
plotwitherrorPlot Command For XY Plots With Error Bars
plus-.cfArithmetically add correlators
plus-.raw_cfadd two 'raw_cf' objects
print.averxprint.averx
print.bootstrapfitPrint a bootstrap NLS fit
print.cfprint.cf
print.effectivemassfitprint.effectivemassfit
print.ofitprint.ofit
print.pionfitpionfit print
print.raw_cfPrint summary of data contained in 'raw_cf' container
protonproton
pscor.sampleSample pseudoscalar correlator
raw_cfContainer for raw correlation functions
raw_cf_dataOriginal data mixin constructor for 'raw_cf'
raw_cf_meta'raw_cf' metadata mixin constructor
raw_cf_to_cfExtract a particular internal component of a 'raw_cf' into a...
readbinarycfread correlation function from binary files
readbinarydiscread disconnected loops from binary files
readbinarysamplesRead binary correlation function by sample
readcmidatafilesRead Single Data Files in Chris Michael Format
readcmidiscreads disconnected loops in cmi format
readgradflowRead Gradient Flow Output Files in tmLQCD format
readhlcorreadhlcor
readnissatextcfreader for Nissa text format correlation functions
readoutputdataRead Data In output.data Format of tmLQCD
readtextcfRead correlator data from single file
restore_seedRestore random number generator state
samplecfSample cf data
shift.cfshift a correlation function by 'places' time-slices
shift.raw_cfshift a 'raw_cf' correlation function by 'places' time-slices
simple.nlsfitNLS fit with without bootstrap
slash-.cfArithmetically divide correlators
slash-.raw_cfdivide two 'raw_cf' objects
string2errorstring2error
subtract.excitedstatesSubstract excited states.
summary.averxsummary.averx
summary.bootstrapfitSummarize a bootstrap NLS fit
summary.cfsummary.cf
summary.effectivemasssummary.effectivemass
summary.effectivemassfitsummary.effectivemassfit
summary.gevp.amplitudesummary.gevp.amplitude
summary.hadronacfsummary.hadronacf
summary.matrixfitsummary.matrixfit
summary.ofitsummary.ofit
summary.pionffsummary.pionff
summary.pionfitpionfit summary
summary.raw_cfPrint summary of data contained in 'raw_cf' container
summary.uwerrsummary.uwerr
swap_seedSave random number generator state
symmetrise.cfsymmetrise.cf
takeTimeDiff.cfTake time difference
tex.catwitherrorpaste a number with error in tex-ready format
tikzutilsConvenience Functions for 'tikzDevice'
times-.raw_cfmultiply two 'raw_cf' objects
uwerrTime Series Analysis With Gamma Method
uwerr.cfuwerr.cf
uwerr.raw_cfGamma method analysis on all time-slices in a 'raw_cf' object
variationalvariational analysis of a correlator matrix
zeta_zpComputes the running of Z_P from scale mu0 to scale mu2
HISKP-LQCD/hadron documentation built on Nov. 19, 2019, 4:50 a.m.