extract_data: Extract and check the data

In HOPE-UIB-BIO/R-Ratepol-package: R-Ratepol: Estimating Rate of Change in Temporal Sequences

Extract and check the data

Description

Function for general preparation of input data

Usage

extract_data(
  data_community_extract,
  data_age_extract,
  age_uncertainty = NULL,
  verbose = FALSE
)

Arguments

data_community_extract	Data.frame. Community data with species as columns and levels (samples) as rows. First column should be sample_id (character).
data_age_extract	Data.frame with two columns: sample_id - unique ID of each level (character) age - age of level (numeric)
age_uncertainty	Usage of age uncertainty form Age-depth models. Either: matrix with number of columns as number of samples. Each column is one sample, each row is one age sequence from age-depth model. Age sequence is randomly sampled from age-depth model uncertainties at the beginning of each run. NULL - Age uncertainties are not available and, therefore, will not be used.
verbose	DESCRIPTION. Logical. If TRUE, function will output messages about internal processes

HOPE-UIB-BIO/R-Ratepol-package documentation built on March 6, 2024, 7:10 a.m.