Man pages for Hafro/rgadget
Tools to Create and Maintain Gadget Models
| callGadget | Call GADGET |
| callParamin | Call paramin |
| deprecated_functions | Deprecated functions |
| fix_headers | Fix data headers in Gadget input files |
| gadget_catchdistribution_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:catchdist |
| gadget_catchinkilos_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:catchinkilos |
| gadget_catchstatistics_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:catchstat |
| gadgetdata | Construct a data-only gadget file |
| gadget_discard | Discard named component |
| gadget_discard.gadgetfleet | this function removes named fleet components |
| gadget_discard.gadgetlikelihood | this function removes named likelihood components |
| gadget_discard.gadgetprint | this function removes named print components |
| gadget_evaluate | Evaluate a gadget model |
| gadgetfile | Construct a new gadgetfile S3 object |
| gadgetFileIO | Old style gadget file input and output (mostly deprecated) |
| gadget_filetypes | Recognised GADGET file types and their quirks |
| gadget_fit | Gadget fit |
| gadget.fit | Gadget fit |
| gadgetfleet | Create a gadgetfleet object |
| gadgetfleetcomponent | Create/update a fleet component with name |
| gadget.iterative | Removed functions |
| gadget_iterative_stage_1 | Iterative reweighting for Gadget models An implementation of... |
| gadgetlikelihood | Create a gadgetlikelihood object |
| gadgetlikelihoodcomponent | Wrapper to choose a component by name |
| gadget_likelihoodprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:likelihoodprinter |
| gadget_likelihoodsummaryprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:likelihoodsummaryprinter |
| gadget_migrationpenalty_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:migpenalty |
| gadget_optimize | Evaluate a gadget model |
| gadget.parameters | Gadget parameters |
| gadget_penalty_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:boundlike |
| gadget.phasing | Gadget Phasing |
| gadget_predatoroverprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:predatoroverprinter |
| gadget_predatorpreyprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:predatorpreyprinter |
| gadget_predatorprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:predatorprinter |
| gadgetprintcomponent | Wrapper to choose a component by name |
| gadgetprintfile | Create a gadgetprint object |
| gadget_projections | Gadget projection function |
| gadget_recaptures_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:recaptures |
| gadget_recstatistics_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:recstat |
| gadget.retro | Analytical retrospective |
| gadget.retro.fit | Retro fit |
| gadgetstock | Create a gadgetstock object |
| gadget_stockdistribution_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:stockdist |
| gadget_stockfullprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:stockfullprinter |
| gadget_stockpreyfullprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:stockpreyfullprinter |
| gadget_stockpreyprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:stockpreyprinter |
| gadget_stockprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:stockprinter |
| gadget_stockstdprinter_component | https://hafro.github.io/gadget2/userguide/chap-print.html#sec:stockstdprinter |
| gadget_stomachcontent_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:stomach |
| gadget_surveydistribution_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:surveydistribution |
| gadget_surveyindices_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:surveyindices |
| gadgettime | Create a gadgettime object |
| gadget_understocking_component | http://hafro.github.io/gadget/docs/userguide/chap-like.html#sec:understocking |
| gadget_update | Update gadget components |
| gadget_update.gadgetfleet | Update gadget fleet components in a fleet file |
| gadget_update.gadgetlikelihood | Update gadget likelihood components in a likelihood file |
| gadget_update.gadgetprint | Update gadget print components in a print file |
| gadget_update.gadgetstock | Update comonents of a gadgetstock object |
| gadget_update.gadgettime | Update gadget time components in a time file |
| gadget.variant.dir | Write the changes to the model into a model variant directory |
| gd_to_unix | gadget.variant.dir to unix line endings |
| make.gadget.printfile | Make gadget printfile |
| parse.gadget.formulae | Parse a GADGET formulae string |
| pipe | Pipe operator |
| plot.gadget.fit | plot gadget fit |
| print.gadgetfile | Print given gadgetfile to stdout |
| read.gadget.file | Read gadget input file, return gadgetfile S3 class... |
| read.gadget.lik.out | Read gadget lik.out |
| read.gadget.results | Gadget results |
| read.printfiles | Read gadget printfiles |
| sub.gadget.formulae | Replace variables in formulae |
| suitability | Prey suitability |
| to.gadget.formulae | Turn R expression into GADGET formulae string |
| variant_append_settings | Append setting to variant directories |
| von_B_formula | von B formula |
| write.gadget.file | Write gadgetfile to disk, including any dependant files, and... |
