Man pages for HamdaBinteAjmal/DBN4GRN
An R Package for Learning Sparse DBN Structures to Reverse Engineer Gene Regulatory Networks
| ApplyLasso | This function applies L1 regularised Lasso regression on the... |
| CalculatePrecisionAndRecallForMultiple | This function is used to compute the results for a simulation... |
| CalculatePriors | This function calculates the LOPC or the LASSO parents of... |
| CombineBICandPriors | Internal function. For full exhaustive search, sum up the BIC... |
| ConstructBNUsingMaxScoringParents | This function takes in all scores for all parents... |
| DBN4GRN | DBN4GRN Package contains functions to learn sparse dynamic... |
| ExecuteG1DBNS1 | This function calculates the first order conditional... |
| ExhaustiveSearchForBestParents | Exhaustively looks for best combination of parents, up to max... |
| GetAMAT | This function is for internal use only. |
| GreedySearchParentsWithPriors | This function applied greedy hill climbing search to find the... |
| GreedySearchWithPriors_OneTarget | Internal function Applied greedy hill-climbing search to each... |
| ImputeData | Applies linear interpolation for missing (NA) values in the... |
| LASSO | Internal function. Applies Lasso regression on the dataset... |
| MakeAllPossibleCombination | Makes all possible combination of sets of parents, maximum... |
| MakeArcSet | Take a learned Bayesian network structure (bnlearn object)... |
| Normalisation_01 | Normalise the data values between 0 and 1. |
| PercentageValidatedFromRecovered | This function calculates the number and percentage of true... |
| ScoreEntirepossibleSetsOfParents | This methods calculates BIC score for each target node, for... |
| ShiftData | Puts the data in a time frame with values of variables in the... |
| ShiftData_delta | Puts the data in a time frame with values of variables in the... |
| SimulateData | Simulate Data This function first generates a random network... |
| yeast_data | Spellmans Yeast Cell Cycle data From this study... |
| yeasts_arcs_validated | Regulatory links verified by research and experimentation,... |
