Files in HannahVMeyer/PhenotypeSimulator
Flexible Phenotype Simulation from Different Genetic and Noise Models

.Rbuildignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/PhenotypeSimulator.R R/RcppExports.R R/commandlineFunctions.R R/createphenotypeFunctions.R R/genotypeFunctions.R R/outputFunctions.R R/pkg.R R/utilityFunctions.R R/variancecomponentFunctions.R README.Rmd README.md cran-comments.md

docs/404.html

docs/LICENSE-text.html

docs/LOG.html

docs/_config.yml

docs/articles/PhenotypeSimulator.html

docs/articles/PhenotypeSimulator_files/accessible-code-block-0.0.1/empty-anchor.js

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docs/articles/Sample-scripts-external-genotype-simulation.html

docs/articles/Simulation-and-LinearModel.html

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docs/articles/SimulationBasedOnExampleData.html

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docs/articles/UsagePhenotypeSimulator.html

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docs/articles/cor_pheno-min.png

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docs/articles/cor_simulated.png

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docs/reference/commaList2vector.html

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docs/reference/readStandardGenotypes.html

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docs/reference/rescaleVariance.html

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docs/reference/savePheno.html

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docs/reference/simulateGenotypes.html

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docs/reference/standardiseGenotypes.html

docs/reference/testNumerics.html

docs/reference/transformNonlinear.html

docs/reference/vmessage.html

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inst/CITATION

inst/extdata/genotypes/genome/genotypes_genome.txt

inst/extdata/genotypes/genome/simulate_genotypes_genome.sh

inst/extdata/genotypes/genotypes_chr22.bimbam

inst/extdata/genotypes/genotypes_chr22.csv

inst/extdata/genotypes/hapgen/genotypes_hapgen.cases.gen

inst/extdata/genotypes/hapgen/genotypes_hapgen.cases.sample

inst/extdata/genotypes/hapgen/genotypes_hapgen.controls.gen

inst/extdata/genotypes/hapgen/genotypes_hapgen.controls.sample

inst/extdata/genotypes/hapgen/genotypes_hapgen.summary

inst/extdata/genotypes/hapgen/genotypes_hapgen_chr22.gen

inst/extdata/genotypes/hapgen/genotypes_hapgen_chr22.sample

inst/extdata/genotypes/hapgen/legend_file

inst/extdata/genotypes/hapgen/simulate_genotypes_hapgen2.sh

inst/extdata/genotypes/plink/genotypes_plink.bed

inst/extdata/genotypes/plink/genotypes_plink.bim

inst/extdata/genotypes/plink/genotypes_plink.fam

inst/extdata/genotypes/plink/genotypes_plink.log

inst/extdata/genotypes/plink/genotypes_plink.simfreq

inst/extdata/genotypes/plink/plink_sim_par.txt

inst/extdata/genotypes/plink/simulate_genotypes_plink.sh

inst/extdata/kinship/kinship.csv

inst/extdata/resultsSimulationAndLinearModel/SNP_NrSNP10.csv

inst/extdata/resultsSimulationAndLinearModel/SNP_effects_NrSNP10.csv

inst/extdata/resultsSimulationAndLinearModel/correlation_phenotype.pdf

inst/extdata/resultsSimulationAndLinearModel/gwas_results_gemma_qqplot.png

inst/extdata/resultsSimulationAndLinearModel/sigSNPs.csv

inst/extdata/resultsSimulationAndLinearModel/simulated_withEffect.csv

inst/extdata/resultsSimulationAndLinearModel/simulation_phenoComponentsFinal.rds

inst/extdata/vignettes/cor_pheno-min.png

inst/extdata/vignettes/cor_pheno.png

inst/extdata/vignettes/cor_simulated-min.png

inst/extdata/vignettes/cor_simulated.png

inst/extdata/vignettes/covs.rds

inst/extdata/vignettes/gwas_results_gemma_qqplot.png

inst/extdata/vignettes/pheno_small.rds

inst/extdata/vignettes/wallthickness-min.png

inst/extdata/vignettes/wallthickness.png

man/PhenotypeSimulator.Rd man/addNonNulls.Rd man/commaList2vector.Rd man/correlatedBgEffects.Rd man/expGen2probGen.Rd man/geneticBgEffects.Rd man/geneticFixedEffects.Rd man/getAlleleFrequencies.Rd man/getCausalSNPs.Rd man/getKinship.Rd man/noiseBgEffects.Rd man/noiseFixedEffects.Rd man/probGen2expGen.Rd man/readStandardGenotypes.Rd man/read_lines.Rd man/rescaleVariance.Rd man/runSimulation.Rd man/savePheno.Rd man/setModel.Rd man/simulateDist.Rd man/simulateGenotypes.Rd man/simulatePhenotypes.Rd man/standardiseGenotypes.Rd man/testNumerics.Rd man/transformNonlinear.Rd man/vmessage.Rd man/writeStandardOutput.Rd

pkgdown/extra.css

src/Makevars

src/RcppExports.cpp

src/read_lines.cpp

tests/testthat.R tests/testthat/test-components.R tests/testthat/test-createphenotypeFunctions.r tests/testthat/test-genotype.r tests/testthat/test-output.R tests/testthat/test-utility.r vignettes/PhenotypeSimulator.Rmd

vignettes/PhenotypeSimulator.html

vignettes/Simulation-and-LinearModel.Rmd

vignettes/Simulation-and-LinearModel.log

vignettes/SimulationAndLinearModel.bib

vignettes/SimulationBasedOnExampleData.Rmd

vignettes/Vignette-example-data.bib

vignettes/cor_pheno-min.png

vignettes/cor_simulated-min.png

vignettes/genotype-simulation.bib

vignettes/gwas_results_gemma_qqplot.png

vignettes/plos-genetics.csl

vignettes/sample-scripts-external-genotype-simulation.Rmd

vignettes/sample-scripts-external-genotype-simulation.html

vignettes/wallthickness-min.png

HannahVMeyer/PhenotypeSimulator documentation built on July 19, 2021, 7:41 a.m.

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HannahVMeyer/PhenotypeSimulator
Flexible Phenotype Simulation from Different Genetic and Noise Models

Files in HannahVMeyer/PhenotypeSimulator
Flexible Phenotype Simulation from Different Genetic and Noise Models

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HannahVMeyer/PhenotypeSimulator Flexible Phenotype Simulation from Different Genetic and Noise Models

Files in HannahVMeyer/PhenotypeSimulator Flexible Phenotype Simulation from Different Genetic and Noise Models

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We want your feedback!

HannahVMeyer/PhenotypeSimulator
Flexible Phenotype Simulation from Different Genetic and Noise Models

Files in HannahVMeyer/PhenotypeSimulator
Flexible Phenotype Simulation from Different Genetic and Noise Models