Man pages for HannahVMeyer/PhenotypeSimulator
Flexible Phenotype Simulation from Different Genetic and Noise Models
| addNonNulls | Add all non-NULL elements of list. |
| commaList2vector | Comma-separated string to numeric vector. |
| correlatedBgEffects | Simulate correlated background effects. |
| expGen2probGen | Rewrite expected genotypes into genotype probabilities. |
| geneticBgEffects | Simulate infinitesimal genetic effects (reflecting sample... |
| geneticFixedEffects | Simulate genetic variant effects. |
| getAlleleFrequencies | Compute allele frequencies from genotype data. |
| getCausalSNPs | Draw random SNPs from genotypes. |
| getKinship | Get genetic kinship. |
| noiseBgEffects | Simulate observational noise effects. |
| noiseFixedEffects | Simulate noise fixed effects. |
| PhenotypeSimulator | PhenotypeSimulator: A package for simulating phenotypes from... |
| probGen2expGen | Compute expected genotypes from genotype probabilities. |
| read_lines | Scan file for specific line numbers |
| readStandardGenotypes | Read genotypes from file. |
| rescaleVariance | Scale phenotype component. |
| runSimulation | Run phenotype simulation. |
| savePheno | Save final phenotype and phenotype components. |
| setModel | Set simulation model. |
| simulateDist | Data simulation for different distributions. |
| simulateGenotypes | Simulate bi-allelic genotypes. |
| simulatePhenotypes | Command line execution for PhenotypeSimulator. |
| standardiseGenotypes | Standardise genotypes. |
| testNumerics | Test lists for different properties of numerics. |
| transformNonlinear | Phenotype transformation. |
| vmessage | Print userinfo. |
| writeStandardOutput | Write simulated data into formats used by standard GWAS... |
