GlowwormSubpopulation: Generate ranked Glowworm scores for specific subpopulation/s
In Hannahglover/Glowworm: Mapping genes to single cell RNAseq
View source: R/GlowwormSubpopulation.R
GlowwormSubpopulation R Documentation
Generate ranked Glowworm scores for specific subpopulation/s
Description
Generate ranked Glowworm scores for specific subpopulation/s
Usage
GlowwormSubpopulation(GlowwormScaleOutput, TargetPopulations)
Arguments
GlowwormScaleOutput
Output from GlowwormScale
TargetPopulations
A vector of populations for ranking
Value
This function takes the output from GlowwormGlobal and generates a rank score specific for the population/s of interest
Exports a list containing:
MetaData - A copy of the metadata
GlowwormScaleOutput - A scaled data frame of n genes by n populations in metadata
SumStats - A data frame containing Total enrichment score (Abundance), SD enrichment score (Specificity) and
the population specific rank score.
Output list can be used to generate a stacked bar plot via GlowwormOutputStacked.
Hannahglover/Glowworm documentation built on Jan. 16, 2024, 11:47 p.m.
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View source: R/GlowwormSubpopulation.R
| GlowwormSubpopulation | R Documentation |
Generate ranked Glowworm scores for specific subpopulation/s
Description
Generate ranked Glowworm scores for specific subpopulation/s
Usage
GlowwormSubpopulation(GlowwormScaleOutput, TargetPopulations)
Arguments
GlowwormScaleOutput |
Output from GlowwormScale |
TargetPopulations |
A vector of populations for ranking |
Value
This function takes the output from GlowwormGlobal and generates a rank score specific for the population/s of interest
Exports a list containing:
MetaData - A copy of the metadata
GlowwormScaleOutput - A scaled data frame of n genes by n populations in metadata
SumStats - A data frame containing Total enrichment score (Abundance), SD enrichment score (Specificity) and the population specific rank score.
Output list can be used to generate a stacked bar plot via GlowwormOutputStacked.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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