PIMENTo is an R package to normalize, analyze, and visualize microarray data
You can install PIMENTo
using devtools
and BiocManager
:
# Install Dependencies from CRAN
install.packages(c('devtools', 'BiocManager'), repos='https://cloud.r-project.org/')
# Install Dependencies from Bioconductor
BiocManager::install(c('impute', 'DESeq2', 'affy', 'limma'))
# Install PIMENTo
devtools::install_github("HardimanLab/PIMENTo")
# Load package
library(PIMENTo)
To start an interactive PIMENTo
session and mount the current
working directory, $PWD
, within the Docker
container to /home/pimento/
Run the following:
docker run -v "$PWD:/home/pimento/" --rm -it hardimanlab/pimento
Note that the --rm flag means that the container will autoremove after you close the PIMENTo session.
PIMENTo - GitHub PIMENTo - DockerHub
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.