Files in Hardy-Lab-Statistical-Genetics/HLSGUtils
This package contains many functions that were used in the Hardy Lab Statistical Genetics projects.
.Rbuildignore
.gitignore
DESCRIPTION
IRISUtils.Rproj
NAMESPACE
R/CSVJoinDelta.R
R/VCF2Delata.R
R/aggregate_coefficients.R
R/function_to_Rscripts.R
R/gwas_lmer_modeling.r
R/lmer_modeling.r
R/parallel_rscripts.r
R/phonotype_gwas_partitioner.R
R/wgs_adni_partitioner.R
README.Rmd
README.md
data/genoData.rda
data/phenoData.rda
derby.log
docs/404.html
docs/articles/ADNI-Mixed-Effect-Models.html
docs/articles/genomicsUtils.html
docs/articles/index.html
docs/articles/parallelize.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CSVJoinDelta.html
docs/reference/VCF2Delta.html
docs/reference/aggregate_lmer_coefficients.html
docs/reference/aggregate_models.html
docs/reference/figures/HLSG.png
docs/reference/figures/HLSG.svg
docs/reference/figures/HLSGUtils.png
docs/reference/figures/HLSGUtils.svg
docs/reference/figures/IRISUtils.png
docs/reference/figures/IRISUtils.svg
docs/reference/figures/gene.png
docs/reference/function_to_Rscript.html
docs/reference/index.html
docs/reference/lmer_modeling.html
docs/reference/parallel_rscripts.html
docs/reference/phonotype_gwas_partitioner.html
docs/reference/wgs_adno_partitioner.html
docs/sitemap.xml
inst/data/1KG_SNP_chr19.delta/.part-00000-d6f2ef9b-fd46-4346-8572-109ffc865b46-c000.snappy.parquet.crc
inst/data/1KG_SNP_chr19.delta/_delta_log/00000000000000000000.json
inst/data/1KG_SNP_chr19.delta/part-00000-d6f2ef9b-fd46-4346-8572-109ffc865b46-c000.snappy.parquet
inst/data/1KG_SNP_chr19.vcf.gz
inst/data/1KG_p_value.csv
inst/data/genoData.csv
inst/data/phenoData.csv
inst/jars/GenomicsUtils.jar
man/CSVJoinDelta.Rd
man/VCF2Delta.Rd
man/aggregate_models.Rd
man/figures/HLSG.png
man/figures/HLSG.svg
man/figures/HLSGUtils.png
man/figures/HLSGUtils.svg
man/figures/gene.png
man/function_to_Rscript.Rd
man/gwas_lmer_modeling.Rd
man/lmer_modeling.Rd
man/parallel_rscripts.Rd
man/phonotype_gwas_partitioner.Rd
man/wgs_adno_partitioner.Rd
metastore_db/README_DO_NOT_TOUCH_FILES.txt
metastore_db/db.lck
metastore_db/dbex.lck
metastore_db/log/README_DO_NOT_TOUCH_FILES.txt
metastore_db/log/log.ctrl
metastore_db/log/log1.dat
metastore_db/log/logmirror.ctrl
metastore_db/seg0/README_DO_NOT_TOUCH_FILES.txt
metastore_db/seg0/c10.dat
metastore_db/seg0/c101.dat
metastore_db/seg0/c111.dat
metastore_db/seg0/c121.dat
metastore_db/seg0/c130.dat
metastore_db/seg0/c141.dat
metastore_db/seg0/c150.dat
metastore_db/seg0/c161.dat
metastore_db/seg0/c171.dat
metastore_db/seg0/c180.dat
metastore_db/seg0/c191.dat
metastore_db/seg0/c1a1.dat
metastore_db/seg0/c1b1.dat
metastore_db/seg0/c1c0.dat
metastore_db/seg0/c1d1.dat
metastore_db/seg0/c1e0.dat
metastore_db/seg0/c1f1.dat
metastore_db/seg0/c20.dat
metastore_db/seg0/c200.dat
metastore_db/seg0/c211.dat
metastore_db/seg0/c221.dat
metastore_db/seg0/c230.dat
metastore_db/seg0/c241.dat
metastore_db/seg0/c251.dat
metastore_db/seg0/c260.dat
metastore_db/seg0/c271.dat
metastore_db/seg0/c281.dat
metastore_db/seg0/c290.dat
metastore_db/seg0/c2a1.dat
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metastore_db/seg0/c2c1.dat
metastore_db/seg0/c2d0.dat
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metastore_db/seg0/cb1.dat
metastore_db/seg0/cc0.dat
metastore_db/seg0/cd1.dat
metastore_db/seg0/ce1.dat
metastore_db/seg0/cf0.dat
metastore_db/service.properties
vignettes/.gitignore
vignettes/articles/ADNI-Mixed-Effect-Models.Rmd
vignettes/articles/TRUE
vignettes/articles/derby.log
vignettes/articles/genomicsUtils.Rmd
vignettes/articles/metastore_db/README_DO_NOT_TOUCH_FILES.txt
vignettes/articles/metastore_db/db.lck
vignettes/articles/metastore_db/dbex.lck
vignettes/articles/metastore_db/log/README_DO_NOT_TOUCH_FILES.txt
vignettes/articles/metastore_db/log/log.ctrl
vignettes/articles/metastore_db/log/log1.dat
vignettes/articles/metastore_db/log/logmirror.ctrl
vignettes/articles/metastore_db/seg0/README_DO_NOT_TOUCH_FILES.txt
vignettes/articles/metastore_db/seg0/c10.dat
vignettes/articles/metastore_db/seg0/c101.dat
vignettes/articles/metastore_db/seg0/c111.dat
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vignettes/articles/metastore_db/seg0/c130.dat
vignettes/articles/metastore_db/seg0/c141.dat
vignettes/articles/metastore_db/seg0/c150.dat
vignettes/articles/metastore_db/seg0/c161.dat
vignettes/articles/metastore_db/seg0/c171.dat
vignettes/articles/metastore_db/seg0/c180.dat
vignettes/articles/metastore_db/seg0/c191.dat
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vignettes/articles/metastore_db/seg0/ce1.dat
vignettes/articles/metastore_db/seg0/cf0.dat
vignettes/articles/metastore_db/service.properties
vignettes/articles/parallelize.Rmd
