gwas_lmer_modeling: LMER Modeling Function

In Hardy-Lab-Statistical-Genetics/HLSGUtils: This package contains many functions that were used in the Hardy Lab Statistical Genetics projects.

LMER Modeling Function

Description

This function is designed to run 'lmer' models on data partition. It takes a formula based on variables that are set in function 'phonotype_gwas_partitioner' (clinical and PCA variables). To set WGS in the 'lmer' formula, use 'copy_number' term.

Usage

gwas_lmer_modeling(data_path, simulation_name, formula, save_model_path)

Arguments

data_path	the path of partition data
simulation_name	when save output models, is used in name of save model file.
formula	Character variable for 'lmer' formula.
save_model_path	The directory of saving model outout.

Hardy-Lab-Statistical-Genetics/HLSGUtils documentation built on March 29, 2022, 10:09 p.m.