getCommonOrthologs: getCommonOrthologs Function

In HectorRDB/HectorRDB: Useful function for everyday use

Description

This function takes as input two count matrices from human and mouse and return the matrices subset to the ortholog genes

Usage

getCommonOrthologs(listMouse, listHuman, refMouse, refHuman)

Arguments

listMouse	the genes from the mouse where we want the orthologs
listHuman	the genes from the human where we want the orthologs
refMouse	the gencode reference for mouse. Either a number (the gencode version) or the location of the file.
refHuman	the gencode reference for human. Either a number (the gencode version) or the location of the file

Details

When several genes from one species map to at least one gene from the other, we return all genes. This function is inspired adapted from

HectorRDB/HectorRDB documentation built on Oct. 15, 2020, 6:16 p.m.