R/data.R

In HectorRDB/bioc2021trajectories: Trajectory inference across conditions: differential topology, progression and expression

#' A \link[SingleCellExperiment]{SingleCellExperiment} object
#'
#' This dataset contains all the information used for the TGFB case studies
#'
#' #' @references
#' Jos\'{e}  L.  McFaline-Figueroa,  Andrew  J.  Hill,  Xiaojie  Qiu,
#' Dana  Jackson,  Jay  Shendure,  and  Cole Trapnell.
#' *A pooled single-cell genetic screen identifies regulatory checkpoints in *
#' *the continuum of the epithelial-to-mesenchymal transition.*
#' Nature Genetics, 51(9):1389–1398, sep 2019.  ISSN 15461718.
#' doi:  10.1038/s41588-019-0489-5.
#' @source
#' See the TGFB vignette to generate this data
#' @usage data(tgfb)
"tgfb"

#' A \link[SingleCellExperiment]{SingleCellExperiment} object
#'
#' This dataset contains all the information used for the KRAS case studies
#'
#' @references
#' Jenny Y. Xue, Yulei Zhao, Jordan Aronowitz, Trang T. Mai, Alberto Vides,
#' Besnik Qeriqi, Dongsung Kim, Chuanchuan Li, Elisa de Stanchina, Linas Mazutis,
#'  Davide Risso, and Piro Lito.
#' *Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition.*
#' Nature, 577(7790):421–425,jan  2020. ISSN  14764687. doi: 10.1038/s41586-019-1884-x
#' @source
#' See the KRAS vignette to generate this data
#' @usage data(kras)
"kras"