generate_countmat: generate a countmat matrix given gene number and cell number

In Helena-L/DropseqSimulator: Dropseq Simulator

Description

generate a countmat matrix given gene number and cell number

Usage

generate_countmat(ngenes, ncells, loc, scale)

Arguments

ngenes	gene number
ncells	cell number
loc	location parameter for the library size log-normal distribution, together with libscale controls library size. Determine different sequencing depth (number of reads) between cells.
scale	scale parameter for the library size log-normal distribution, together with libloc controls library size. Determine different sequencing depth (number of reads) between ceels.

Value

a countmat matrix

Helena-L/DropseqSimulator documentation built on May 14, 2019, 9:37 a.m.