srrTMB: Fits Stock Recruitment Relationships (SRR) in TBM

In Henning-Winker/FLSRTMBbeta: FLSR in TMB

Description

Fits Stock Recruitment Relationships (SRR) in TBM

Usage

srrTMB(
  object,
  spr0,
  s = NULL,
  s.est = TRUE,
  s.logitsd = 1.3,
  plim = NULL,
  nyears = NULL,
  report.sR0 = FALSE,
  inits = NULL,
  lower = NULL,
  upper = NULL,
  SDreport = TRUE
)

Arguments

object	Input FLSR object.
spr0	unfished spawning biomass per recruit from FLCore::spr0(FLStock)
s	steepness parameter of SRR (fixed or prior mean)
s.est	option to estimate steepness
s.logitsd	prior sd for logit(s), default is 1.3 (flat) if s.est = TRUE
plim	determines the minimum break point of the hockey-stick as ratio blim/b0
nyears	yearMeans from the tail used to compute a,b from the reference spr0 (default all years)
report.sR0	option to report s and R0 instead of a,b
inits	option to specify initial values of log(r0), log(SigR) and logit(s)
lower	option to specify lower bounds of log(r0), log(SigR) and logit(s)
upper	option to specify upper bounds of log(r0), log(SigR) and logit(s)
SDreport	option to converge hessian and get vcov

Value

A list containing elements 'FLSR', of class FLSR

Henning-Winker/FLSRTMBbeta documentation built on Dec. 17, 2021, 10:32 p.m.