fit_jabba: Fit JABBA model

In Henning-Winker/JABBApkg: Just Another Bayesian Biomass Assessment

Description

Fits JABBA model in JAGS and produce output object as list()

Usage

fit_jabba(
  jbinput,
  ni = 30000,
  nt = 5,
  nb = 5000,
  nc = 2,
  init.values = FALSE,
  init.K = NULL,
  init.r = NULL,
  init.q = NULL,
  peels = NULL,
  save.all = FALSE,
  save.jabba = FALSE,
  save.csvs = FALSE,
  save.prjkobe = FALSE,
  output.dir = getwd(),
  silent = FALSE
)

Arguments

jbinput	List of input variables as output by build_jabba() MCMC settings
ni	number of iterations
nt	thinning interval of saved iterations
nb	burn-in
nc	number of mcmc chains Initial values
init.values	= FALSE,
init.K	= NULL,
init.r	= NULL,
init.q	= NULL,# vector
peels	= NULL, # retro peel option
save.all	= FALSE
save.jabba	= FALSE
output.dir	path to save plot. default is getwd()
silent	option mute messages

Value

A result list containing estimates of model input, settings and results

Examples

data(bet)
jbinput <- build_jabba()

Henning-Winker/JABBApkg documentation built on Oct. 29, 2020, 9:11 a.m.