flmvn_traits: flmvn_traits()

In Henning-Winker/SPMpriors: SPM prior generation with FishLife

Description

Generate stock parameters with tuning from FishLife (Thorson et al. 2000) using MVN

Usage

flmvn_traits(
  Genus = "Rhabdosargus",
  Species = "globiceps",
  Loo = NULL,
  K = NULL,
  tmax = NULL,
  tm = NULL,
  M = NULL,
  Lm = NULL,
  h = NULL,
  nmc = 2 * 10^5,
  upper.quant = 0.9,
  Plot = TRUE,
  savepng = FALSE,
  PlotPath = getwd()
)

Arguments

Genus	genus name must match FishBase
Species	species name must match FishBase
Loo	optional tuning prior dist for Linf c(mu, cv)
K	optional tuning prior dist for brody K c(mu, cv)
tmax	optional tuning prior dist for maximum age c(mu, cv)
tm	optional tuning prior dist for age maturity c(mu, cv)
Lm	optional tuning prior dist for length maturity c(mu, cv)
h	optional uniform tuning prior dist for steepness h c(min, max)
nmc	number Monte-Carlo MVN draws
upper.quant	upper quatile for CIs ,
Plot	option TRUE/FALSE to switch of plots
savepng	option TRUE/FALSE to save plots as png
PlotPath	directory to save plot if savepng=TRUE

Value

stock parameter list, mvn covar, Monte-Carlo matrix of stock pars

Author(s)

Henning Winker (JRC-EC)

Henning-Winker/SPMpriors documentation built on Feb. 19, 2021, 2:57 p.m.