Files in HenrikBengtsson/CostelloPSCNSeq
Parent-Specific Copy-Number Estimation Pipeline using HT-Seq Data
.Rbuildignore
.gitignore
.make/Makefile
.make/README.md.rsp
DESCRIPTION
Makefile
NAMESPACE
NEWS
OVERVIEW.md
R/pairs_from_samples.R
R/pscnseq.R
R/pscnseq_mpileup.R
R/pscnseq_pscbs.R
R/pscnseq_reports.R
R/pscnseq_sequenza.R
R/read_samples.R
R/utils.R
README.md
inst/WORDLIST
inst/config.yml
inst/future-configs/batchtools/.future.R
inst/future-configs/batchtools/batchtools.torque.tmpl
inst/samples.tsv
inst/scripts/0.setup.R
inst/scripts/1-4.submit_all.pbs
inst/scripts/1.mpileup.pbs
inst/scripts/2.sequenza.pbs
inst/scripts/3.pscbs.pbs
inst/scripts/4.reports.pbs
man/pscnseq.Rd
man/pscnseq_mpileup.Rd
man/pscnseq_pscbs.Rd
man/pscnseq_reports.Rd
man/pscnseq_sequenza.Rd
tests/read_samples.R
