pscnseq_reports: Produces Copy-Number Summary Reports in PDF

In HenrikBengtsson/CostelloPSCNSeq: Parent-Specific Copy-Number Estimation Pipeline using HT-Seq Data

Description

Produces Copy-Number Summary Reports in PDF

Usage

pscnseq_reports(dataset, organism, chrs, samples, verbose = FALSE)

Arguments

dataset	(character) The name of the dataset as on file.
organism	(character) The name of the organism as on file.
chrs	(character vector) The name of the chromosomes to be processed, e.g. c("1", "2", "X").
samples	(character) Pathname to a tab-delimited sample specification file, typically named ‘*.tsv’, e.g. ‘samples.tsv’.
verbose	(logical) If TRUE, then verbose output is produced, otherwise not.

Value

(character vector) Pathnames to PDF files.

HenrikBengtsson/CostelloPSCNSeq documentation built on Feb. 28, 2021, 5:49 p.m.