Run revdep_details(, "aRchi")
for more info
checking examples ... ERROR ``` Running examples in ‘aRchi-Ex.R’ failed The error most likely occurred in:
Name: read_QSM
Title: Read a QSM
Aliases: read_QSM
** Examples
file=system.file("extdata","Tree_1_TreeQSM.txt",package = "aRchi") QSM=read_QSM(file,model="treeQSM") Warning in readMat5or73Header(this, firstFourBytes = firstFourBytes) : Unknown endian: 29. Will assume Bigendian. Warning in readMat5or73Header(this, firstFourBytes = firstFourBytes) : Unknown MAT version tag: 14132. Will assume version 5. Error in mat5ReadTag(this) : Unknown data type. Not in range [1, 19]: 14638 Calls: read_QSM ... readMat.default -> readMat5 -> readMat5DataElement -> mat5ReadTag Execution halted ```
Run revdep_details(, "BacArena")
for more info
checking installed package size ... NOTE
installed size is 10.8Mb
sub-directories of 1Mb or more:
R 1.2Mb
data 3.3Mb
libs 5.7Mb
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘glpkAPI’
All declared Imports should be used.
Run revdep_details(, "hyperSpec")
for more info
checking re-building of vignette outputs ... NOTE ``` Error(s) in re-building vignettes: --- re-building ‘chondro.pdf.asis’ using asis --- finished re-building ‘chondro.pdf.asis’
--- re-building ‘fileio.pdf.asis’ using asis --- finished re-building ‘fileio.pdf.asis’
--- re-building ‘baseline.Rnw’ using Sweave Loading required package: lattice Loading required package: grid ... l.14 \usepackage []{helvet}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘plotting.Rnw’
SUMMARY: processing the following files failed: ‘baseline.Rnw’ ‘flu.Rnw’ ‘hyperspec.Rnw’ ‘laser.Rnw’ ‘plotting.Rnw’
Error: Vignette re-building failed. Execution halted ```
Run revdep_details(, "lans2r")
for more info
'LazyData' is specified without a 'data' directory
Run revdep_details(, "MethylMix")
for more info
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘digest’
All declared Imports should be used.
checking R code for possible problems ... NOTE
MethylMix: no visible global function definition for ‘is’
Undefined global functions or variables:
is
Consider adding
importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Run revdep_details(, "retistruct")
for more info
checking package dependencies ... NOTE
Packages suggested but not available for checking:
'gWidgets2RGtk2', 'cairoDevice', 'RGtk2'
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘RTriangle’
All declared Imports should be used.
Run revdep_details(, "scalpel")
for more info
'LazyData' is specified without a 'data' directory
Run revdep_details(, "SemNeT")
for more info
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘RColorBrewer’ ‘grid’ ‘purrr’
All declared Imports should be used.
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘NetworkToolbox’, ‘SemNetCleaner’
Run revdep_details(, "SemNetCleaner")
for more info
Namespaces in Imports field not imported from:
‘editData’ ‘miniUI’
All declared Imports should be used.
Run revdep_details(, "sojourner")
for more info
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.4Mb
extdata 3.5Mb
Run revdep_details(, "SuperPCA")
for more info
Namespaces in Imports field not imported from:
‘R.matlab’ ‘fBasics’ ‘spls’
All declared Imports should be used.
Run revdep_details(, "theft")
for more info
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘theft.Rmd’ using rmarkdown No IDs removed. All value vectors good for feature extraction. Running computations for catch22... Warning: As of 0.1.14 the feature 'CO_f1ecac' returns a double instead of int This warning is displayed once per session.
Calculations completed for catch22. Null testing method 'model free shuffles' is fast. Consider running more permutations for more reliable results. N = 10000 is recommended. ... Quitting from lines 283-301 (theft.Rmd) Error: processing vignette 'theft.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘theft.Rmd’
SUMMARY: processing the following file failed: ‘theft.Rmd’
Error: Vignette re-building failed. Execution halted ```
Run revdep_details(, "TRONCO")
for more info
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: Warning in tools:::buildVignettes(dir = "/c4/home/henrik/repositories/R.matlab/revdep/checks/TRONCO/new/TRONCO.Rcheck/vign_test/TRONCO") : Files named as vignettes but with no recognized vignette engine: ‘vignettes/1_introduction.Rmd’ ‘vignettes/2_loading_data.Rmd’ ‘vignettes/3_data_visualization.Rmd’ ‘vignettes/4_data_manipulation.Rmd’ ‘vignettes/5_model_inference.Rmd’ ‘vignettes/6_post_reconstruction.Rmd’ ‘vignettes/7_import_export.Rmd’ ... l.189 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘vignette.Rnw’
SUMMARY: processing the following file failed: ‘vignette.Rnw’
Error: Vignette re-building failed. Execution halted ```
checking files in ‘vignettes’ ... NOTE
Files named as vignettes but with no recognized vignette engine:
‘vignettes/1_introduction.Rmd’
‘vignettes/2_loading_data.Rmd’
‘vignettes/3_data_visualization.Rmd’
‘vignettes/4_data_manipulation.Rmd’
‘vignettes/5_model_inference.Rmd’
‘vignettes/6_post_reconstruction.Rmd’
‘vignettes/7_import_export.Rmd’
(Is a VignetteBuilder field missing?)
Run revdep_details(, "VMDecomp")
for more info
installed size is 6.2Mb
sub-directories of 1Mb or more:
libs 4.8Mb
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