revdep/problems.md

In HenrikBengtsson/R.matlab: Read and Write MAT Files and Call MATLAB from Within R

aRchi

• Version: 2.1.2
• GitHub: https://github.com/umr-amap/aRchi
• Source code: https://github.com/cran/aRchi
• Date/Publication: 2022-08-07 14:30:05 UTC
• Number of recursive dependencies: 86

Run revdep_details(, "aRchi") for more info

In both

• checking examples ... ERROR ``` Running examples in ‘aRchi-Ex.R’ failed The error most likely occurred in:

  Name: read_QSM

  Title: Read a QSM

  Aliases: read_QSM

  ** Examples

  file=system.file("extdata","Tree_1_TreeQSM.txt",package = "aRchi") QSM=read_QSM(file,model="treeQSM") Warning in readMat5or73Header(this, firstFourBytes = firstFourBytes) : Unknown endian: 29. Will assume Bigendian. Warning in readMat5or73Header(this, firstFourBytes = firstFourBytes) : Unknown MAT version tag: 14132. Will assume version 5. Error in mat5ReadTag(this) : Unknown data type. Not in range [1, 19]: 14638 Calls: read_QSM ... readMat.default -> readMat5 -> readMat5DataElement -> mat5ReadTag Execution halted ```

BacArena

• Version: 1.8.2
• GitHub: https://github.com/euba/BacArena
• Source code: https://github.com/cran/BacArena
• Date/Publication: 2020-05-20 15:40:12 UTC
• Number of recursive dependencies: 65

Run revdep_details(, "BacArena") for more info

In both

• checking installed package size ... NOTE installed size is 10.8Mb sub-directories of 1Mb or more: R 1.2Mb data 3.3Mb libs 5.7Mb

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘glpkAPI’ All declared Imports should be used.

hyperSpec

• Version: 0.100.0
• GitHub: https://github.com/r-hyperspec/hyperSpec
• Source code: https://github.com/cran/hyperSpec
• Date/Publication: 2021-09-13 13:00:02 UTC
• Number of recursive dependencies: 141

Run revdep_details(, "hyperSpec") for more info

In both

• checking re-building of vignette outputs ... NOTE ``` Error(s) in re-building vignettes: --- re-building ‘chondro.pdf.asis’ using asis --- finished re-building ‘chondro.pdf.asis’

  --- re-building ‘fileio.pdf.asis’ using asis --- finished re-building ‘fileio.pdf.asis’

  --- re-building ‘baseline.Rnw’ using Sweave Loading required package: lattice Loading required package: grid ... l.14 \usepackage []{helvet}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘plotting.Rnw’

  SUMMARY: processing the following files failed: ‘baseline.Rnw’ ‘flu.Rnw’ ‘hyperspec.Rnw’ ‘laser.Rnw’ ‘plotting.Rnw’

  Error: Vignette re-building failed. Execution halted ```

lans2r

• Version: 1.1.0
• GitHub: https://github.com/KopfLab/lans2r
• Source code: https://github.com/cran/lans2r
• Date/Publication: 2020-06-24 05:20:03 UTC
• Number of recursive dependencies: 85

Run revdep_details(, "lans2r") for more info

In both

• checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

MethylMix

• Version: 2.26.0
• GitHub: NA
• Source code: https://github.com/cran/MethylMix
• Date/Publication: 2022-04-26
• Number of recursive dependencies: 81

Run revdep_details(, "MethylMix") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘digest’ All declared Imports should be used.

• checking R code for possible problems ... NOTE MethylMix: no visible global function definition for ‘is’ Undefined global functions or variables: is Consider adding importFrom("methods", "is") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').

retistruct

• Version: 0.6.3
• GitHub: https://github.com/davidcsterratt/retistruct
• Source code: https://github.com/cran/retistruct
• Date/Publication: 2020-04-04 10:10:02 UTC
• Number of recursive dependencies: 85

Run revdep_details(, "retistruct") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'gWidgets2RGtk2', 'cairoDevice', 'RGtk2'

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘RTriangle’ All declared Imports should be used.

scalpel

• Version: 1.0.3
• GitHub: NA
• Source code: https://github.com/cran/scalpel
• Date/Publication: 2021-02-03 05:30:02 UTC
• Number of recursive dependencies: 38

Run revdep_details(, "scalpel") for more info

In both

• checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

SemNeT

• Version: 1.4.3
• GitHub: https://github.com/AlexChristensen/SemNeT
• Source code: https://github.com/cran/SemNeT
• Date/Publication: 2021-09-04 04:40:02 UTC
• Number of recursive dependencies: 158

Run revdep_details(, "SemNeT") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RColorBrewer’ ‘grid’ ‘purrr’ All declared Imports should be used.

• checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘NetworkToolbox’, ‘SemNetCleaner’

SemNetCleaner

• Version: 1.3.4
• GitHub: https://github.com/AlexChristensen/SemNetCleaner
• Source code: https://github.com/cran/SemNetCleaner
• Date/Publication: 2021-09-16 14:00:02 UTC
• Number of recursive dependencies: 93

Run revdep_details(, "SemNetCleaner") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘editData’ ‘miniUI’ All declared Imports should be used.

sojourner

• Version: 1.10.0
• GitHub: https://github.com/sheng-liu/sojourner
• Source code: https://github.com/cran/sojourner
• Date/Publication: 2022-04-26
• Number of recursive dependencies: 113

Run revdep_details(, "sojourner") for more info

In both

• checking installed package size ... NOTE installed size is 5.3Mb sub-directories of 1Mb or more: doc 1.4Mb extdata 3.5Mb

SuperPCA

• Version: 0.4.0
• GitHub: NA
• Source code: https://github.com/cran/SuperPCA
• Date/Publication: 2021-07-26 12:30:07 UTC
• Number of recursive dependencies: 36

Run revdep_details(, "SuperPCA") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R.matlab’ ‘fBasics’ ‘spls’ All declared Imports should be used.

theft

• Version: 0.3.9.6
• GitHub: https://github.com/hendersontrent/theft
• Source code: https://github.com/cran/theft
• Date/Publication: 2022-05-31 09:20:02 UTC
• Number of recursive dependencies: 151

Run revdep_details(, "theft") for more info

In both

• checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘theft.Rmd’ using rmarkdown No IDs removed. All value vectors good for feature extraction. Running computations for catch22... Warning: As of 0.1.14 the feature 'CO_f1ecac' returns a double instead of int This warning is displayed once per session.

  Calculations completed for catch22. Null testing method 'model free shuffles' is fast. Consider running more permutations for more reliable results. N = 10000 is recommended. ... Quitting from lines 283-301 (theft.Rmd) Error: processing vignette 'theft.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘theft.Rmd’

  SUMMARY: processing the following file failed: ‘theft.Rmd’

  Error: Vignette re-building failed. Execution halted ```

TRONCO

• Version: 2.28.0
• GitHub: https://github.com/BIMIB-DISCo/TRONCO
• Source code: https://github.com/cran/TRONCO
• Date/Publication: 2022-04-26
• Number of recursive dependencies: 98

Run revdep_details(, "TRONCO") for more info

In both

• checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: Warning in tools:::buildVignettes(dir = "/c4/home/henrik/repositories/R.matlab/revdep/checks/TRONCO/new/TRONCO.Rcheck/vign_test/TRONCO") : Files named as vignettes but with no recognized vignette engine: ‘vignettes/1_introduction.Rmd’ ‘vignettes/2_loading_data.Rmd’ ‘vignettes/3_data_visualization.Rmd’ ‘vignettes/4_data_manipulation.Rmd’ ‘vignettes/5_model_inference.Rmd’ ‘vignettes/6_post_reconstruction.Rmd’ ‘vignettes/7_import_export.Rmd’ ... l.189 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘vignette.Rnw’

  SUMMARY: processing the following file failed: ‘vignette.Rnw’

  Error: Vignette re-building failed. Execution halted ```

• checking files in ‘vignettes’ ... NOTE Files named as vignettes but with no recognized vignette engine: ‘vignettes/1_introduction.Rmd’ ‘vignettes/2_loading_data.Rmd’ ‘vignettes/3_data_visualization.Rmd’ ‘vignettes/4_data_manipulation.Rmd’ ‘vignettes/5_model_inference.Rmd’ ‘vignettes/6_post_reconstruction.Rmd’ ‘vignettes/7_import_export.Rmd’ (Is a VignetteBuilder field missing?)

VMDecomp

• Version: 1.0.1
• GitHub: https://github.com/mlampros/VMDecomp
• Source code: https://github.com/cran/VMDecomp
• Date/Publication: 2022-07-04 15:40:02 UTC
• Number of recursive dependencies: 68

Run revdep_details(, "VMDecomp") for more info

In both

• checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: libs 4.8Mb

HenrikBengtsson/R.matlab documentation built on Aug. 28, 2022, 3:21 p.m.