Man pages for HenrikBengtsson/aroma.cn.eval
Objective Assessment of Copy-Number Estimates
| aroma.cn.eval-package | Package aroma.cn.eval |
| blockAvg.matrix | Average matrix |
| findRocSmoothingForTpAtFp | Find the amount of smoothing needed to obtain a minimum... |
| findRocSmoothingForTpAtFp.SegmentedGenomicSignalsInterface | Finds the abount of binned smoothing required to achieve a... |
| findRocTpAtFp | Find the ROC true-positive (TP) rate for a given... |
| findRocTpAtFp.SegmentedGenomicSignalsInterface | Estimates the true-positive rate at a given false-positive... |
| fitRoc | Calculates the Receiver Operating Characteristic (ROC) |
| fitRoc.SegmentedGenomicSignalsInterface | Estimates the ROC for calling the state of genomic loci |
| getBlockAverageMap | Gets a index map for averaging blocks of data |
| makeTruth | Creates a state function for a given ROC change-point region |
| Non-documented_objects | Non-documented objects |
| parseRegion | Parses a ROC change-point region string |
| RocCurve | The RocCurve class |
| scanRocTpAtFp | Find the ROC true-positive (TP) rate for a given... |
| testSeparation.SegmentedGenomicSignalsInterface | Tests statistically the separation between two states |
