on 2022-11-11
I've verified this submission has no negative impact on any of the six reverse package dependencies available on CRAN (n=5) and Bioconductor (n=1).
Thank you
The package has been verified using R CMD check --as-cran
on:
| R version | GitHub | R-hub | mac/win-builder | | --------- | ------ | ------ | --------------- | | 3.4.x | . | | | | 3.6.x | . | | | | 4.0.x | . | | | | 4.1.x | L | | | | 4.2.x | L . . | L W | . W | | devel | L . . | L | W |
Legend: OS: L = Linux, S = Solaris, M = macOS, M1 = macOS M1, W = Windows
Comments:
macbuilder does not support Bioconductor dependencies
GitHub macOS checks fail due to DNAcopy installation issues, i.e.
Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load
shared object
'/Users/runner/work/_temp/Library/DNAcopy/libs/DNAcopy.so':
dlopen(/Users/runner/work/_temp/Library/DNAcopy/libs/DNAcopy.so,
0x0006): Symbol not found: (__gfortran_os_error_at)
GitHub MS Windows checks fail due to an 'sfit' issue, cf. https://github.com/HenrikBengtsson/sfit/issues/7
GitHub Linux older R version: Skipped to conserve GitHub credits
R-hub checks:
res <- rhub::check(platforms = c(
"debian-clang-devel",
"debian-gcc-patched",
"fedora-gcc-devel",
"macos-highsierra-release-cran",
"windows-x86_64-release"
))
print(res)
gives
── aroma.core 3.3.0: NOTE
Build ID: aroma.core_3.3.0.tar.gz-f8db413876b44baabea935bfb150b4a4
Platform: Debian Linux, R-devel, clang, ISO-8859-15 locale
Submitted: 6h 39m 7.4s ago
Build time: 1h 27m 8.1s
❯ checking package dependencies ... NOTE
Packages suggested but not available for checking: 'EBImage', 'GLAD'
❯ checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'GLAD'
0 errors ✔ | 0 warnings ✔ | 2 notes ✖
── aroma.core 3.3.0: NOTE
Build ID: aroma.core_3.3.0.tar.gz-4dc7b49a4575400793f962c0b39cfcc1
Platform: Debian Linux, R-patched, GCC
Submitted: 6h 39m 7.4s ago
Build time: 1h 30m 8.1s
❯ checking package dependencies ... NOTE
Packages suggested but not available for checking: 'EBImage', 'GLAD'
❯ checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'GLAD'
── aroma.core 3.3.0: NOTE
Build ID: aroma.core_3.3.0.tar.gz-b14fbf5a6d1245089bd560b64304fdd7
Platform: Fedora Linux, R-devel, GCC
Submitted: 6h 39m 7.4s ago
Build time: 58m 52.1s
❯ checking package dependencies ... NOTE
Packages suggested but not available for checking: 'EBImage', 'GLAD'
❯ checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘GLAD’
0 errors ✔ | 0 warnings ✔ | 2 notes ✖
── aroma.core 3.3.0: ERROR
Build ID: aroma.core_3.3.0.tar.gz-19bef8d0e8d947879e33fb72c607d014
Platform: macOS 10.13.6 High Sierra, R-release, CRAN's setup
Submitted: 6h 39m 7.5s ago
Build time: 3m 19.4s
❯ checking package dependencies ... ERROR
Package suggested but not available: ‘EBImage’
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
1 error ✖ | 0 warnings ✔ | 0 notes ✔
── aroma.core 3.3.0: NOTE
Build ID: aroma.core_3.3.0.tar.gz-b1d4a5dcecff4494ae438756be585c0b
Platform: Windows Server 2022, R-release, 32/64 bit
Submitted: 6h 39m 7.5s ago
Build time: 6m 37.1s
❯ checking package dependencies ... NOTE
0 errors ✔ | 0 warnings ✔ | 1 note ✖
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