segmentByGLAD.RawGenomicSignals: Segment copy numbers using the GLAD method

In HenrikBengtsson/aroma.core: Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework

Segment copy numbers using the GLAD method

Description

Segment copy numbers using the GLAD method of the GLAD package.

Usage

## S3 method for class 'RawGenomicSignals'
segmentByGLAD(this, ..., flavor=c("glad", "daglad"), cache=FALSE, force=FALSE,
  verbose=FALSE)

Arguments

...	Additional arguments passed to the segmentation function.
flavor	A character string specifying what flavor of GLAD should be used.
verbose	See Verbose.

Details

Internally glad or daglad is used to segment the signals. This segmentation method does not support weighted segmentation.

Value

Returns the fit object.

Author(s)

Henrik Bengtsson

See Also

For more information see RawGenomicSignals.

HenrikBengtsson/aroma.core documentation built on Feb. 20, 2024, 9:17 p.m.