future: Unified Parallel and Distributed Processing in R for Everyone

aifeducation

Version: 1.0.2
GitHub: https://github.com/cran/aifeducation
Source code: https://github.com/cran/aifeducation
Date/Publication: 2025-02-05 13:00:02 UTC
Number of recursive dependencies: 143

Run revdepcheck::revdep_details(, "aifeducation") for more info

checking installed package size ... NOTE installed size is 5.7Mb sub-directories of 1Mb or more: R 1.2Mb data 1.6Mb libs 1.5Mb
checking data for non-ASCII characters ... NOTE Note: found 33 marked UTF-8 strings

AIPW

Version: 0.6.3.2
GitHub: https://github.com/yqzhong7/AIPW
Source code: https://github.com/cran/AIPW
Date/Publication: 2021-06-11 09:30:02 UTC
Number of recursive dependencies: 98

Run revdepcheck::revdep_details(, "AIPW") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘Rsolnp’ ‘SuperLearner’ ‘future.apply’ ‘ggplot2’ ‘progressr’ ‘stats’ ‘utils’ All declared Imports should be used.

AIscreenR

Version: 0.1.1
GitHub: https://github.com/MikkelVembye/AIscreenR
Source code: https://github.com/cran/AIscreenR
Date/Publication: 2024-11-26 14:00:02 UTC
Number of recursive dependencies: 77

Run revdepcheck::revdep_details(, "AIscreenR") for more info

checking data for non-ASCII characters ... NOTE Note: found 1 marked Latin-1 string Note: found 5 marked UTF-8 strings

altdoc

Version: 0.5.0
GitHub: https://github.com/etiennebacher/altdoc
Source code: https://github.com/cran/altdoc
Date/Publication: 2025-01-23 16:40:07 UTC
Number of recursive dependencies: 80

Run revdepcheck::revdep_details(, "altdoc") for more info

checking tests ... ``` Running ‘spelling.R’ Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─altdoc::render_docs(path = getwd()) 8. └─altdoc:::.import_vignettes(...) 9. └─base::vapply(...) ...
1. └─altdoc:::.import_vignettes(...)
2. └─base::vapply(...)
3. └─altdoc (local) FUN(X[[i]], ...)
4. └─altdoc:::.render_one_vignette(...)
5. └─altdoc:::.qmd2md(origin, tar_dir, verbose = verbose, preamble = pre)
6. └─base::cat(out[[2]])
[ FAIL 8 | WARN 0 | SKIP 8 | PASS 55 ] Error: Test failures Execution halted ```

apsimx

Version: 2.8.235
GitHub: https://github.com/femiguez/apsimx
Source code: https://github.com/cran/apsimx
Date/Publication: 2025-03-10 05:40:02 UTC
Number of recursive dependencies: 185

Run revdepcheck::revdep_details(, "apsimx") for more info

checking installed package size ... NOTE installed size is 7.2Mb sub-directories of 1Mb or more: R 1.0Mb extdata 5.4Mb

aroma.affymetrix

Version: 3.2.2
GitHub: https://github.com/HenrikBengtsson/aroma.affymetrix
Source code: https://github.com/cran/aroma.affymetrix
Date/Publication: 2024-02-18 20:40:03 UTC
Number of recursive dependencies: 85

Run revdepcheck::revdep_details(, "aroma.affymetrix") for more info

checking installed package size ... NOTE installed size is 5.4Mb sub-directories of 1Mb or more: R 2.3Mb help 1.1Mb testScripts 1.1Mb

aroma.core

Version: 3.3.1
GitHub: https://github.com/HenrikBengtsson/aroma.core
Source code: https://github.com/cran/aroma.core
Date/Publication: 2024-02-19 08:40:02 UTC
Number of recursive dependencies: 67

Run revdepcheck::revdep_details(, "aroma.core") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

ARPALData

Version: 1.6.1
GitHub: NA
Source code: https://github.com/cran/ARPALData
Date/Publication: 2025-01-10 14:00:10 UTC
Number of recursive dependencies: 140

Run revdepcheck::revdep_details(, "ARPALData") for more info

checking package dependencies ... ERROR ``` Package required but not available: ‘archive’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

BAMBI

Version: 2.3.6
GitHub: https://github.com/c7rishi/BAMBI
Source code: https://github.com/cran/BAMBI
Date/Publication: 2024-10-25 13:30:02 UTC
Number of recursive dependencies: 53

Run revdepcheck::revdep_details(, "BAMBI") for more info

checking installed package size ... NOTE installed size is 8.0Mb sub-directories of 1Mb or more: libs 7.4Mb

bamm

Version: 0.5.0
GitHub: https://github.com/luismurao/bamm
Source code: https://github.com/cran/bamm
Date/Publication: 2024-07-06 20:22:11 UTC
Number of recursive dependencies: 103

Run revdepcheck::revdep_details(, "bamm") for more info

checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: libs 2.9Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘crosstalk’ ‘plotly’ All declared Imports should be used.

batchtools

Version: 0.9.17
GitHub: https://github.com/mllg/batchtools
Source code: https://github.com/cran/batchtools
Date/Publication: 2023-04-20 14:20:06 UTC
Number of recursive dependencies: 81

Run revdepcheck::revdep_details(, "batchtools") for more info

checking dependencies in R code ... NOTE ``` [c4-n43:2866805] OPAL ERROR: Not initialized in file ext2x_client.c at line 112 -------------------------------------------------------------------------- The application appears to have been direct launched using "srun", but OMPI was not built with SLURM's PMI support and therefore cannot execute. There are several options for building PMI support under SLURM, depending upon the SLURM version you are using:

version 16.05 or later: you can use SLURM's PMIx support. This requires that you configure and build SLURM --with-pmix.

Versions earlier than 16.05: you must use either SLURM's PMI-1 or PMI-2 support. SLURM builds PMI-1 by default, or you can manually install PMI-2. You must then build Open MPI using --with-pmi pointing to the SLURM PMI library location.

Please configure as appropriate and try again.

```
checking Rd files ... NOTE checkRd: (-1) JobCollection.Rd:41: Lost braces 41 | \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.} | ^ checkRd: (-1) addAlgorithm.Rd:31: Lost braces 31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the | ^

bayesmove

Version: 0.2.1
GitHub: https://github.com/joshcullen/bayesmove
Source code: https://github.com/cran/bayesmove
Date/Publication: 2021-10-22 08:50:09 UTC
Number of recursive dependencies: 165

Run revdepcheck::revdep_details(, "bayesmove") for more info

checking Rd files ... NOTE checkRd: (-1) insert_NAs.Rd:22: Lost braces; missing escapes or markup? 22 | A data frame where new rows have been inserted to regularize the \code{date} column. This results in values provided for \code{id}, \code{date}, and {dt} while inserting NAs for all other columns. Additionally, observations with duplicate date-times are removed. | ^

bbknnR

Version: 1.1.1
GitHub: https://github.com/ycli1995/bbknnR
Source code: https://github.com/cran/bbknnR
Date/Publication: 2024-02-13 10:20:03 UTC
Number of recursive dependencies: 162

Run revdepcheck::revdep_details(, "bbknnR") for more info

checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: data 3.0Mb libs 1.6Mb

BEKKs

Version: 1.4.5
GitHub: NA
Source code: https://github.com/cran/BEKKs
Date/Publication: 2024-11-25 08:50:06 UTC
Number of recursive dependencies: 85

Run revdepcheck::revdep_details(, "BEKKs") for more info

checking installed package size ... NOTE installed size is 18.7Mb sub-directories of 1Mb or more: libs 17.7Mb

bigDM

Version: 0.5.6
GitHub: https://github.com/spatialstatisticsupna/bigDM
Source code: https://github.com/cran/bigDM
Date/Publication: 2025-03-25 09:30:06 UTC
Number of recursive dependencies: 135

Run revdepcheck::revdep_details(, "bigDM") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘INLA’
checking data for non-ASCII characters ... NOTE Note: found 940 marked Latin-1 strings

bistablehistory

Version: 1.1.2
GitHub: https://github.com/alexander-pastukhov/bistablehistory
Source code: https://github.com/cran/bistablehistory
Date/Publication: 2023-09-13 13:20:09 UTC
Number of recursive dependencies: 95

Run revdepcheck::revdep_details(, "bistablehistory") for more info

checking installed package size ... NOTE installed size is 71.7Mb sub-directories of 1Mb or more: libs 70.7Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

blavaan

Version: 0.5-8
GitHub: https://github.com/ecmerkle/blavaan
Source code: https://github.com/cran/blavaan
Date/Publication: 2025-01-08 19:20:09 UTC
Number of recursive dependencies: 98

Run revdepcheck::revdep_details(, "blavaan") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'cmdstanr', 'blavsam'
checking installed package size ... NOTE installed size is 186.6Mb sub-directories of 1Mb or more: R 1.2Mb libs 183.6Mb testdata 1.4Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

brms

Version: 2.22.0
GitHub: https://github.com/paul-buerkner/brms
Source code: https://github.com/cran/brms
Date/Publication: 2024-09-23 13:00:29 UTC
Number of recursive dependencies: 207

Run revdepcheck::revdep_details(, "brms") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 8.8Mb sub-directories of 1Mb or more: R 3.8Mb doc 3.6Mb

bsitar

Version: 0.3.2
GitHub: https://github.com/Sandhu-SS/bsitar
Source code: https://github.com/cran/bsitar
Date/Publication: 2025-02-07 06:50:02 UTC
Number of recursive dependencies: 167

Run revdepcheck::revdep_details(, "bsitar") for more info

checking installed package size ... NOTE installed size is 8.4Mb sub-directories of 1Mb or more: R 2.0Mb data 5.3Mb

bslib

Version: 0.9.0
GitHub: https://github.com/rstudio/bslib
Source code: https://github.com/cran/bslib
Date/Publication: 2025-01-30 23:20:02 UTC
Number of recursive dependencies: 78

Run revdepcheck::revdep_details(, "bslib") for more info

checking installed package size ... NOTE installed size is 12.6Mb sub-directories of 1Mb or more: components 1.0Mb fonts 2.4Mb lib 5.3Mb

CAESAR.Suite

Version: 0.2.1
GitHub: https://github.com/XiaoZhangryy/CAESAR.Suite
Source code: https://github.com/cran/CAESAR.Suite
Date/Publication: 2025-03-25 12:30:02 UTC
Number of recursive dependencies: 255

Run revdepcheck::revdep_details(, "CAESAR.Suite") for more info

checking installed package size ... NOTE installed size is 10.4Mb sub-directories of 1Mb or more: data 1.4Mb doc 1.2Mb libs 7.6Mb

ceRNAnetsim

Version: 1.18.0
GitHub: https://github.com/selcenari/ceRNAnetsim
Source code: https://github.com/cran/ceRNAnetsim
Date/Publication: 2024-10-29
Number of recursive dependencies: 99

Run revdepcheck::revdep_details(, "ceRNAnetsim") for more info

checking R code for possible problems ... NOTE find_node_perturbation: no visible binding for global variable ‘perturbation_efficiency’ find_node_perturbation: no visible binding for global variable ‘perturbed_count’ simulate: no visible binding for global variable ‘avg_count_current’ simulate: no visible binding for global variable ‘avg_count_pre’ Undefined global functions or variables: avg_count_current avg_count_pre perturbation_efficiency perturbed_count

ChromSCape

Version: 1.16.0
GitHub: https://github.com/vallotlab/ChromSCape
Source code: https://github.com/cran/ChromSCape
Date/Publication: 2024-10-29
Number of recursive dependencies: 232

Run revdepcheck::revdep_details(, "ChromSCape") for more info

checking examples ... ERROR ``` Running examples in ‘ChromSCape-Ex.R’ failed The error most likely occurred in:

Name: get_pathway_mat_scExp

Title: Get pathway matrix

Aliases: get_pathway_mat_scExp

** Examples

data(scExp) ... 4. │ └─tibble:::[.tbl_df(msigdbr::msigdbr("Homo sapiens"), , columns) 5. │ └─tibble:::vectbl_as_col_location(...) 6. │ ├─tibble:::subclass_col_index_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ └─vctrs::vec_as_location(j, n, names, missing = "error", call = call) 9. └─vctrs (local) <fn>() 10. └─vctrs:::stop_subscript_oob(...) 11. └─vctrs:::stop_subscript(...) 12. └─rlang::abort(...) Execution halted ```
checking dependencies in R code ... WARNING 'library' or 'require' call not declared from: ‘dplyr’ 'library' or 'require' call to ‘dplyr’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual.
checking for code/documentation mismatches ... WARNING Codoc mismatches from Rd file 'generate_analysis.Rd': generate_analysis Code: function(input_data_folder, analysis_name = "Analysis_1", output_directory = "./", input_data_type = c("scBED", "DenseMatrix", "SparseMatrix", "scBAM")[1], feature_count_on = c("bins", "genebody", "peaks")[1], feature_count_parameter = 50000, rebin_sparse_matrix = FALSE, ref_genome = c("hg38", "mm10")[1], run = c("filter", "CNA", "cluster", "consensus", "coverage", "DA", "GSA", "report")[c(1, 3, 5, 6, 7, 8)], ... Mismatches in argument names: Position: 5 Code: feature_count_on Docs: rebin_sparse_matrix Position: 6 Code: feature_count_parameter Docs: feature_count_on Position: 7 Code: rebin_sparse_matrix Docs: feature_count_parameter Mismatches in argument default values: Name: 'run' Code: c("filter", "CNA", "cluster", "consensus", "coverage", "DA", "GSA", "report")[c(1, 3, 5, 6, 7, 8)] Docs: c("filter", "CNA", "cluster", "consensus", "peak_call", "coverage", "DA", "GSA", "report")[c(1, 3, 6, 7, 8, 9)]
checking Rd \usage sections ... WARNING ``` Undocumented arguments in Rd file 'rebin_matrix.Rd' ‘rebin_function’

Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. ```
checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
checking installed package size ... NOTE installed size is 8.6Mb sub-directories of 1Mb or more: data 1.5Mb doc 2.9Mb libs 1.1Mb www 2.1Mb
checking R code for possible problems ... NOTE bams_to_matrix_indexes: no visible binding for global variable ‘files_dir_list’ enrich_TF_ChEA3_genes: no visible binding for global variable ‘CheA3_TF_nTargets’ filter_correlated_cell_scExp: no visible binding for global variable ‘run_tsne’ generate_analysis: no visible global function definition for ‘head’ generate_analysis: no visible binding for global variable ‘k’ generate_analysis: no visible binding for global variable ‘clusterConsensus’ ... subset_bam_call_peaks: no visible binding for global variable ‘merged_bam’ Undefined global functions or variables: CheA3_TF_nTargets Component Fri_cyto Gain_or_Loss Gene TF V1 V2 absolute_value cluster clusterConsensus cytoBand files_dir_list genes group head k merged_bam molecule ncells new_row orientation origin_value percent_active run_tsne sample_id total_counts Consider adding importFrom("utils", "head") to your NAMESPACE file.
checking Rd files ... NOTE prepare_Rd: raw_counts_to_sparse_matrix.Rd:6-8: Dropping empty section \source

civis

Version: 3.1.2
GitHub: https://github.com/civisanalytics/civis-r
Source code: https://github.com/cran/civis
Date/Publication: 2023-03-31 08:00:03 UTC
Number of recursive dependencies: 88

Run revdepcheck::revdep_details(, "civis") for more info

checking Rd files ... NOTE checkRd: (-1) enhancements_get_civis_data_match.Rd:60: Lost braces; missing escapes or markup? 60 | \item{inputFieldMapping}{list, The field (i.e., column) mapping for the input table. See https://api.civisanalytics.com/enhancements/field-mapping for a list of valid field types and descriptions. Each field type should be mapped to a string specifying a column name in the input table. For field types that support multiple values (e.g., the "phone" field), a list of column names can be provided (e.g., {"phone": ["home_phone", "mobile_phone"], ...}).} | ^ checkRd: (-1) enhancements_patch_civis_data_match.Rd:53: Lost braces; missing escapes or markup? 53 | \item{input_field_mapping}{list optional. The field (i.e., column) mapping for the input table. See https://api.civisanalytics.com/enhancements/field-mapping for a list of valid field types and descriptions. Each field type should be mapped to a string specifying a column name in the input table. For field types that support multiple values (e.g., the "phone" field), a list of column names can be provided (e.g., {"phone": ["home_phone", "mobile_phone"], ...}).} | ^ checkRd: (-1) enhancements_patch_civis_data_match.Rd:125: Lost braces; missing escapes or markup? 125 | \item{inputFieldMapping}{list, The field (i.e., column) mapping for the input table. See https://api.civisanalytics.com/enhancements/field-mapping for a list of valid field types and descriptions. Each field type should be mapped to a string specifying a column name in the input table. For field types that support multiple values (e.g., the "phone" field), a list of column names can be provided (e.g., {"phone": ["home_phone", "mobile_phone"], ...}).} | ^ checkRd: (-1) enhancements_post_civis_data_match.Rd:24: Lost braces; missing escapes or markup? ... | ^ checkRd: (-1) templates_patch_scripts.Rd:42: Lost braces; missing escapes or markup? 42 | \item allowedValues array, The possible values this parameter can take, effectively making this an enumerable parameter. Allowed values is an array of hashes of the following format: `{label: 'Import', 'value': 'import'}` | ^ checkRd: (-1) templates_post_scripts.Rd:45: Lost braces; missing escapes or markup? 45 | \item allowedValues array, The possible values this parameter can take, effectively making this an enumerable parameter. Allowed values is an array of hashes of the following format: `{label: 'Import', 'value': 'import'}` | ^ checkRd: (-1) templates_put_scripts.Rd:42: Lost braces; missing escapes or markup? 42 | \item allowedValues array, The possible values this parameter can take, effectively making this an enumerable parameter. Allowed values is an array of hashes of the following format: `{label: 'Import', 'value': 'import'}` | ^

ClustIRR

Version: 1.4.0
GitHub: https://github.com/snaketron/ClustIRR
Source code: https://github.com/cran/ClustIRR
Date/Publication: 2024-10-29
Number of recursive dependencies: 118

Run revdepcheck::revdep_details(, "ClustIRR") for more info

checking installed package size ... NOTE installed size is 85.4Mb sub-directories of 1Mb or more: data 1.1Mb doc 3.9Mb libs 79.4Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

codalm

Version: 0.1.2
GitHub: https://github.com/jfiksel/codalm
Source code: https://github.com/cran/codalm
Date/Publication: 2021-07-26 18:40:02 UTC
Number of recursive dependencies: 50

Run revdepcheck::revdep_details(, "codalm") for more info

checking Rd files ... NOTE checkRd: (-1) educFM.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) educFM.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) educFM.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) educFM.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) educFM.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) educFM.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) educFM.Rd:28: Lost braces in \itemize; meant \describe ?

codebook

Version: 0.9.6
GitHub: https://github.com/rubenarslan/codebook
Source code: https://github.com/cran/codebook
Date/Publication: 2025-01-08 08:10:08 UTC
Number of recursive dependencies: 189

Run revdepcheck::revdep_details(, "codebook") for more info

checking data for non-ASCII characters ... NOTE Note: found 65 marked UTF-8 strings

collinear

Version: 2.0.0
GitHub: https://github.com/blasbenito/collinear
Source code: https://github.com/cran/collinear
Date/Publication: 2024-11-08 13:50:02 UTC
Number of recursive dependencies: 47

Run revdepcheck::revdep_details(, "collinear") for more info

checking data for non-ASCII characters ... NOTE Note: found 89 marked Latin-1 strings Note: found 1203 marked UTF-8 strings

Coxmos

Version: 1.1.2
GitHub: https://github.com/BiostatOmics/Coxmos
Source code: https://github.com/cran/Coxmos
Date/Publication: 2025-03-05 16:30:02 UTC
Number of recursive dependencies: 202

Run revdepcheck::revdep_details(, "Coxmos") for more info

checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: R 1.0Mb data 1.2Mb doc 3.1Mb

cSEM

Version: 0.6.0
GitHub: https://github.com/FloSchuberth/cSEM
Source code: https://github.com/cran/cSEM
Date/Publication: 2025-02-25 10:00:02 UTC
Number of recursive dependencies: 146

Run revdepcheck::revdep_details(, "cSEM") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Rdpack’ All declared Imports should be used.

CSGo

Version: 0.6.7
GitHub: https://github.com/adsoncostanzifilho/CSGo
Source code: https://github.com/cran/CSGo
Date/Publication: 2021-05-07 18:50:02 UTC
Number of recursive dependencies: 76

Run revdepcheck::revdep_details(, "CSGo") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘extrafont’ ‘future’ All declared Imports should be used.

dar

Version: 1.2.0
GitHub: https://github.com/MicrobialGenomics-IrsicaixaOrg/dar
Source code: https://github.com/cran/dar
Date/Publication: 2024-10-29
Number of recursive dependencies: 395

Run revdepcheck::revdep_details(, "dar") for more info

checking installed package size ... NOTE installed size is 5.8Mb sub-directories of 1Mb or more: doc 4.4Mb

deseats

Version: 1.1.0
GitHub: NA
Source code: https://github.com/cran/deseats
Date/Publication: 2024-07-12 10:50:15 UTC
Number of recursive dependencies: 114

Run revdepcheck::revdep_details(, "deseats") for more info

checking installed package size ... NOTE installed size is 9.1Mb sub-directories of 1Mb or more: libs 8.3Mb

dipsaus

Version: 0.3.0
GitHub: https://github.com/dipterix/dipsaus
Source code: https://github.com/cran/dipsaus
Date/Publication: 2024-12-17 20:50:02 UTC
Number of recursive dependencies: 62

Run revdepcheck::revdep_details(, "dipsaus") for more info

checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: libs 4.2Mb

disk.frame

Version: 0.8.3
GitHub: https://github.com/DiskFrame/disk.frame
Source code: https://github.com/cran/disk.frame
Date/Publication: 2023-08-24 16:20:10 UTC
Number of recursive dependencies: 98

Run revdepcheck::revdep_details(, "disk.frame") for more info

checking Rd files ... NOTE checkRd: (-1) csv_to_disk.frame.Rd:56: Lost braces; missing escapes or markup? 56 | strings, and you are encouraged to use {fasttime} to convert the strings to | ^ checkRd: (-1) purrr_as_mapper.Rd:10: Lost braces; missing escapes or markup? 10 | \item{.f}{a normal function or purrr syntax function i.e. `~{ ...code...}`} | ^

dispositionEffect

Version: 1.0.1
GitHub: https://github.com/marcozanotti/dispositionEffect
Source code: https://github.com/cran/dispositionEffect
Date/Publication: 2022-05-30 07:50:02 UTC
Number of recursive dependencies: 135

Run revdepcheck::revdep_details(, "dispositionEffect") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: ── Failure ('test-realized_duration.R:113:2'): realized_duration works (realized_only = TRUE) ── realized_duration(...) not equal to c(...). 1/4 mismatches [2] 34 - 28 == 6 ── Failure ('test-realized_duration.R:116:2'): realized_duration works (realized_only = TRUE) ── realized_duration(...) not equal to c(...). ... 1/4 mismatches [2] 34 - 28 == 6 ── Failure ('test-realized_duration.R:161:2'): realized_duration works (realized_only = TRUE) ── realized_duration(...) not equal to c(...). 1/4 mismatches [1] 34 - 28 == 6

[ FAIL 36 | WARN 0 | SKIP 0 | PASS 331 ] Error: Test failures Execution halted ```

distantia

Version: 2.0.2
GitHub: https://github.com/BlasBenito/distantia
Source code: https://github.com/cran/distantia
Date/Publication: 2025-02-01 19:50:02 UTC
Number of recursive dependencies: 68

Run revdepcheck::revdep_details(, "distantia") for more info

checking installed package size ... NOTE installed size is 9.8Mb sub-directories of 1Mb or more: data 1.0Mb libs 7.8Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘fields’
checking data for non-ASCII characters ... NOTE Note: found 844 marked UTF-8 strings

doFuture

Version: 1.0.2
GitHub: https://github.com/futureverse/doFuture
Source code: https://github.com/cran/doFuture
Date/Publication: 2025-03-16 06:00:02 UTC
Number of recursive dependencies: 20

Run revdepcheck::revdep_details(, "doFuture") for more info

checking tests ... ``` Running ‘foreach_dofuture,cluster-missing-doFuture-pkg.R’ Running ‘foreach_dofuture,errors.R’ Running ‘foreach_dofuture,globals.R’ Running ‘foreach_dofuture,nested_colon.R’ ERROR Running the tests in ‘tests/foreach_dofuture,nested_colon.R’ failed. Last 50 lines of output: [20:48:25.405] - Argument 'globals':

[20:48:25.405] logi TRUE ... [20:48:25.417] - identifying globals and packages ... DONE [20:48:25.417] Launching 1 futures (chunks) ... [20:48:25.418] Chunk #1 of 1 ... [20:48:25.418] - Finding globals in 'args_list' for chunk #1 ... [20:48:25.418] [20:48:25.418] [20:48:25.418] - Finding globals in 'args_list' for chunk #1 ... DONE [20:48:25.418] - seeds: Error: future::evalFuture() failed on c4-n43 (pid 3191834) at 2025-03-26T20:48:25. Possible other reasons: there is no connection 5 Execution halted ```

DT

Version: 0.33
GitHub: https://github.com/rstudio/DT
Source code: https://github.com/cran/DT
Date/Publication: 2024-04-04 05:03:17 UTC
Number of recursive dependencies: 52

Run revdepcheck::revdep_details(, "DT") for more info

checking installed package size ... NOTE installed size is 7.8Mb sub-directories of 1Mb or more: htmlwidgets 7.0Mb

EFAtools

Version: 0.4.6
GitHub: https://github.com/mdsteiner/EFAtools
Source code: https://github.com/cran/EFAtools
Date/Publication: 2025-03-21 18:00:13 UTC
Number of recursive dependencies: 92

Run revdepcheck::revdep_details(, "EFAtools") for more info

checking installed package size ... NOTE installed size is 7.6Mb sub-directories of 1Mb or more: libs 6.3Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

envi

Version: 1.0.0
GitHub: https://github.com/lance-waller-lab/envi
Source code: https://github.com/cran/envi
Date/Publication: 2024-11-06 19:00:03 UTC
Number of recursive dependencies: 153

Run revdepcheck::revdep_details(, "envi") for more info

checking whether package ‘envi’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/envi/new/envi.Rcheck/00install.out’ for details.

EpiNow2

Version: 1.7.1
GitHub: https://github.com/epiforecasts/EpiNow2
Source code: https://github.com/cran/EpiNow2
Date/Publication: 2025-02-19 23:40:09 UTC
Number of recursive dependencies: 131

Run revdepcheck::revdep_details(, "EpiNow2") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 265.0Mb sub-directories of 1Mb or more: doc 1.5Mb libs 261.1Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘cmdstanr’
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

epitweetr

Version: 2.2.16
GitHub: https://github.com/EU-ECDC/epitweetr
Source code: https://github.com/cran/epitweetr
Date/Publication: 2023-11-15 09:30:08 UTC
Number of recursive dependencies: 148

Run revdepcheck::revdep_details(, "epitweetr") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘taskscheduleR’
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘httpuv’ ‘knitr’ ‘plyr’ ‘tidyverse’ ‘xml2’ All declared Imports should be used.

EQRN

Version: 0.1.1
GitHub: https://github.com/opasche/EQRN
Source code: https://github.com/cran/EQRN
Date/Publication: 2025-03-17 20:40:02 UTC
Number of recursive dependencies: 41

Run revdepcheck::revdep_details(, "EQRN") for more info

checking examples ... ERROR ``` Running examples in ‘EQRN-Ex.R’ failed The error most likely occurred in:

Name: default_device

Title: Default torch device

Aliases: default_device

** Examples

device <- default_device() Error in cpp_cuda_is_available() : Lantern is not loaded. Please use install_torch() to install additional dependencies. Calls: default_device -> -> cpp_cuda_is_available Execution halted ```
checking whether package ‘EQRN’ can be installed ... WARNING Found the following significant warnings: Warning: ℹ torch failed to start, restart your R session to try again. See ‘/c4/home/henrik/futureverse/future/revdep/checks/EQRN/new/EQRN.Rcheck/00install.out’ for details.

fastRhockey

Version: 0.4.0
GitHub: https://github.com/sportsdataverse/fastRhockey
Source code: https://github.com/cran/fastRhockey
Date/Publication: 2022-10-25 20:55:15 UTC
Number of recursive dependencies: 115

Run revdepcheck::revdep_details(, "fastRhockey") for more info

checking Rd files ... NOTE checkRd: (-1) update_nhl_db.Rd:51-53: Lost braces in \itemize; meant \describe ? checkRd: (-1) update_nhl_db.Rd:54-57: Lost braces in \itemize; meant \describe ? checkRd: (-1) update_phf_db.Rd:51-53: Lost braces in \itemize; meant \describe ? checkRd: (-1) update_phf_db.Rd:54-57: Lost braces in \itemize; meant \describe ?

fdacluster

Version: 0.4.1
GitHub: https://github.com/astamm/fdacluster
Source code: https://github.com/cran/fdacluster
Date/Publication: 2025-01-14 16:50:09 UTC
Number of recursive dependencies: 125

Run revdepcheck::revdep_details(, "fdacluster") for more info

checking installed package size ... NOTE installed size is 23.7Mb sub-directories of 1Mb or more: R 1.9Mb doc 1.5Mb help 2.1Mb libs 17.7Mb

fect

Version: 1.0.0
GitHub: NA
Source code: https://github.com/cran/fect
Date/Publication: 2022-10-14 09:52:32 UTC
Number of recursive dependencies: 69

Run revdepcheck::revdep_details(, "fect") for more info

checking C++ specification ... NOTE Specified C++11: please drop specification unless essential
checking installed package size ... NOTE installed size is 14.8Mb sub-directories of 1Mb or more: libs 13.5Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘panelView’ All declared Imports should be used.

FLAMES

Version: 2.0.2
GitHub: https://github.com/mritchielab/FLAMES
Source code: https://github.com/cran/FLAMES
Date/Publication: 2024-12-09
Number of recursive dependencies: 261

Run revdepcheck::revdep_details(, "FLAMES") for more info

checking examples ... ERROR ``` Running examples in ‘FLAMES-Ex.R’ failed The error most likely occurred in:

Name: create_sce_from_dir

Title: Create 'SingleCellExperiment' object from 'FLAMES' output folder

Aliases: create_sce_from_dir

** Examples

outdir <- tempfile() ... File "/c4/home/henrik/futureverse/future/revdep/library/FLAMES/reticulate/python/rpytools/loader.py", line 120, in hook return _find_and_load(name, import) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/c4/home/henrik/futureverse/future/revdep/checks/FLAMES/new/FLAMES.Rcheck/FLAMES/python/count_gene.py", line 8, in import pandas as pd File "/c4/home/henrik/futureverse/future/revdep/library/FLAMES/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) ^^^^^^^^^^^^ Calls: ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted ```
checking whether package ‘FLAMES’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/c4/home/henrik/futureverse/future/revdep/checks/FLAMES/new/FLAMES.Rcheck/00install.out’ for details.
checking installed package size ... NOTE installed size is 7.2Mb sub-directories of 1Mb or more: data 2.7Mb doc 2.0Mb libs 1.4Mb
checking R code for possible problems ... NOTE create_spe: no visible binding for global variable 'barcode' filter_coverage: no visible global function definition for 'starts_with' filter_coverage: no visible binding for global variable 'filter_res' find_barcode: no visible binding for global variable 'Sample' find_barcode: no visible binding for global variable 'Outfile' find_variants_grange: no visible binding for global variable 'which_label' find_variants_grange: no visible binding for global variable 'nucleotide' ... filter_res gene_id head imageX imageY input label length_bin max_length min_length multi-matching reads mutation_index n_reads name nucleotide output pct pos read1_with_adapter read_counts ref region single match reads starts_with total reads total_counts tr_id tr_length transcript type undemultiplexted reads value which_label x y Consider adding importFrom("base", "match", "single") importFrom("utils", "head") to your NAMESPACE file.
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

flowGraph

Version: 1.14.0
GitHub: https://github.com/aya49/flowGraph
Source code: https://github.com/cran/flowGraph
Date/Publication: 2024-10-29
Number of recursive dependencies: 92

Run revdepcheck::revdep_details(, "flowGraph") for more info

checking R code for possible problems ... NOTE get_child: no visible binding for global variable ‘no_cores’ get_paren: no visible binding for global variable ‘no_cores’ ms_psig: no visible binding for global variable ‘meta’ Undefined global functions or variables: meta no_cores
checking Rd files ... NOTE checkRd: (-1) fg_get_graph.Rd:13: Lost braces 13 | A list containing two data frames (\code{v} and ]code{e}) | ^ checkRd: (-1) ggdf.Rd:22: Lost braces 22 | code{ggdf} adds to the data frames \code{v} and \code{e} in slot | ^
checking Rd cross-references ... NOTE Unknown package ‘doParallel’ in Rd xrefs

forecastML

Version: 0.9.0
GitHub: https://github.com/nredell/forecastML
Source code: https://github.com/cran/forecastML
Date/Publication: 2020-05-07 15:10:17 UTC
Number of recursive dependencies: 103

Run revdepcheck::revdep_details(, "forecastML") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dtplyr’ All declared Imports should be used.

future.tests

Version: 0.7.0
GitHub: https://github.com/HenrikBengtsson/future.tests
Source code: https://github.com/cran/future.tests
Date/Publication: 2023-05-22 05:30:19 UTC
Number of recursive dependencies: 15

Run revdepcheck::revdep_details(, "future.tests") for more info

checking tests ... ``` Running ‘Test-class.R’ Running ‘check.R’ Running ‘cli_fcn.R’ Running ‘db_state.R’ Running ‘evaluate_expr,ff.R’ Running ‘evaluate_expr.R’ Running ‘one-test.R’ Running ‘progress.R’ Running ‘test_db.R’ Running ‘test_plans.R’ ... plan(multisession, workers = 2L)

stopifnot(length(test_plans) == 4L)

res <- along_test_plans({ 42L }) Evaluating expression under future plan #1 of 4 ... Error in eval(strategy, envir = parent.frame(), enclos = baseenv()) : object 'constant' not found Calls: along_test_plans -> eval -> eval -> plan -> eval -> eval Execution halted ```

GeDS

Version: 0.2.8
GitHub: https://github.com/emilioluissaenzguillen/GeDS
Source code: https://github.com/cran/GeDS
Date/Publication: 2025-03-14 10:10:02 UTC
Number of recursive dependencies: 46

Run revdepcheck::revdep_details(, "GeDS") for more info

checking whether package ‘GeDS’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/GeDS/new/GeDS.Rcheck/00install.out’ for details.

geocmeans

Version: 0.3.4
GitHub: https://github.com/JeremyGelb/geocmeans
Source code: https://github.com/cran/geocmeans
Date/Publication: 2023-09-12 03:10:02 UTC
Number of recursive dependencies: 207

Run revdepcheck::revdep_details(, "geocmeans") for more info

checking installed package size ... NOTE installed size is 14.4Mb sub-directories of 1Mb or more: extdata 3.0Mb libs 9.1Mb

geohabnet

Version: 2.1.3
GitHub: https://github.com/GarrettLab/HabitatConnectivity
Source code: https://github.com/cran/geohabnet
Date/Publication: 2024-06-27 11:50:02 UTC
Number of recursive dependencies: 144

Run revdepcheck::revdep_details(, "geohabnet") for more info

checking tests ... `` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html ... 9. └─geohabnet::get_rasters(cparams$CCRI parameters`$Hosts)
1. └─geohabnet::crops_rast(hosts)
2. └─future.apply::future_lapply(...)
3. └─future.apply:::future_xapply(...)
4. ├─future::value(fs)
5. └─future:::value.list(fs)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 16 ] Error: Test failures Execution halted ```
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘LinkWeightsAnalysis.Rmd’ using rmarkdown trying URL 'https://s3.us-east-2.amazonaws.com/earthstatdata/HarvestedAreaYield175Crops_Indvidual_Geotiff/potato_HarvAreaYield_Geotiff.zip'

Quitting from LinkWeightsAnalysis.Rmd:34-43 [run] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in .getClassesFromCache(): ! class should be either a character-string name or a class definition

...

Error: processing vignette 'analysis.Rmd' failed with diagnostics: unable to find an inherited method for function 'wrap' for signature 'x = "NULL"' --- failed re-building ‘analysis.Rmd’

SUMMARY: processing the following files failed: ‘LinkWeightsAnalysis.Rmd’ ‘analysis.Rmd’

Error: Vignette re-building failed. Execution halted ```

GeoModels

Version: 2.1.0
GitHub: https://github.com/vmoprojs/GeoModels
Source code: https://github.com/cran/GeoModels
Date/Publication: 2025-01-14 18:40:02 UTC
Number of recursive dependencies: 54

Run revdepcheck::revdep_details(, "GeoModels") for more info

checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: R 1.0Mb data 1.9Mb libs 2.7Mb

googleComputeEngineR

Version: 0.3.0
GitHub: https://github.com/cloudyr/googleComputeEngineR
Source code: https://github.com/cran/googleComputeEngineR
Date/Publication: 2019-05-04 22:40:02 UTC
Number of recursive dependencies: 59

Run revdepcheck::revdep_details(, "googleComputeEngineR") for more info

checking Rd files ... NOTE checkRd: (-1) docker_cmd.gce_instance.Rd:21: Lost braces; missing escapes or markup? 21 | \item{nvidia}{If true will use \code{nvidia-docker} instead of {docker}} | ^ checkRd: (-1) gce_list_disks.Rd:11: Lost braces; missing escapes or markup? 11 | \item{filter}{Sets a filter expression for filtering listed resources, in the form filter={expression}} | ^ checkRd: (-1) gce_list_disks_all.Rd:11: Lost braces; missing escapes or markup? 11 | \item{filter}{Sets a filter expression for filtering listed resources, in the form filter={expression}} | ^ checkRd: (-1) gce_list_firewall_rules.Rd:11: Lost braces; missing escapes or markup? ... | ^ checkRd: (-1) gce_list_networks.Rd:11: Lost braces; missing escapes or markup? 11 | \item{filter}{Sets a filter expression for filtering listed resources, in the form filter={expression}} | ^ checkRd: (-1) gce_list_zone_op.Rd:11: Lost braces; missing escapes or markup? 11 | \item{filter}{Sets a filter expression for filtering listed resources, in the form filter={expression}} | ^ checkRd: (-1) gce_list_zones.Rd:13: Lost braces; missing escapes or markup? 13 | \item{filter}{Sets a filter expression for filtering listed resources, in the form filter={expression}} | ^
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

googleTagManageR

Version: 0.2.0
GitHub: NA
Source code: https://github.com/cran/googleTagManageR
Date/Publication: 2022-04-16 18:12:29 UTC
Number of recursive dependencies: 67

Run revdepcheck::revdep_details(, "googleTagManageR") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘assertthat’ ‘future’ ‘httr’ All declared Imports should be used.

greed

Version: 0.6.1
GitHub: https://github.com/comeetie/greed
Source code: https://github.com/cran/greed
Date/Publication: 2022-10-03 22:00:05 UTC
Number of recursive dependencies: 96

Run revdepcheck::revdep_details(, "greed") for more info

checking C++ specification ... NOTE Specified C++11: please drop specification unless essential
checking installed package size ... NOTE installed size is 39.2Mb sub-directories of 1Mb or more: data 1.5Mb libs 36.3Mb
checking data for non-ASCII characters ... NOTE Note: found 989 marked UTF-8 strings

gsynth

Version: 1.2.1
GitHub: NA
Source code: https://github.com/cran/gsynth
Date/Publication: 2021-08-06 07:50:05 UTC
Number of recursive dependencies: 65

Run revdepcheck::revdep_details(, "gsynth") for more info

checking C++ specification ... NOTE Specified C++11: please drop specification unless essential
checking installed package size ... NOTE installed size is 5.7Mb sub-directories of 1Mb or more: libs 5.3Mb

gtfs2gps

Version: 2.1-2
GitHub: https://github.com/ipeaGIT/gtfs2gps
Source code: https://github.com/cran/gtfs2gps
Date/Publication: 2024-10-08 07:00:06 UTC
Number of recursive dependencies: 87

Run revdepcheck::revdep_details(, "gtfs2gps") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(gtfs2gps) gtfs2gps version 2.1-2 is now loaded NOTE: All filter functions from gtfs2gps were removed Please replace them by similar functions from gtfstools > ...
1. └─terra (local) .local(x, ...)
2. ├─terra::makeValid(x)
3. └─terra::makeValid(x)
4. └─terra (local) .local(x, ...)
5. └─terra:::messages(x)
6. └─terra:::error(f, x@pntr$getError())
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 119 ] Error: Test failures Execution halted ```

hackeRnews

Version: 0.1.0
GitHub: https://github.com/szymanskir/hackeRnews
Source code: https://github.com/cran/hackeRnews
Date/Publication: 2019-12-13 13:20:05 UTC
Number of recursive dependencies: 67

Run revdepcheck::revdep_details(, "hackeRnews") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

hacksig

Version: 0.1.2
GitHub: https://github.com/Acare/hacksig
Source code: https://github.com/cran/hacksig
Date/Publication: 2022-02-17 14:22:02 UTC
Number of recursive dependencies: 75

Run revdepcheck::revdep_details(, "hacksig") for more info

checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in msigdbr(): ! Unknown subcollection.

Backtrace: ...

Error: processing vignette 'hacksig.Rmd' failed with diagnostics: Unknown subcollection. --- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed: ‘hacksig.Rmd’

Error: Vignette re-building failed. Execution halted ```

hal9001

Version: 0.4.6
GitHub: https://github.com/tlverse/hal9001
Source code: https://github.com/cran/hal9001
Date/Publication: 2023-11-14 15:00:02 UTC
Number of recursive dependencies: 98

Run revdepcheck::revdep_details(, "hal9001") for more info

checking installed package size ... NOTE installed size is 5.3Mb sub-directories of 1Mb or more: libs 4.9Mb

hbamr

Version: 2.4.2
GitHub: https://github.com/jbolstad/hbamr
Source code: https://github.com/cran/hbamr
Date/Publication: 2025-03-05 11:40:03 UTC
Number of recursive dependencies: 90

Run revdepcheck::revdep_details(, "hbamr") for more info

checking installed package size ... NOTE installed size is 92.1Mb sub-directories of 1Mb or more: libs 90.7Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

hero

Version: 0.6
GitHub: NA
Source code: https://github.com/cran/hero
Date/Publication: 2023-07-15 21:10:09 UTC
Number of recursive dependencies: 158

Run revdepcheck::revdep_details(, "hero") for more info

checking dependencies in R code ... NOTE ``` [c4-n43:3742892] OPAL ERROR: Not initialized in file ext2x_client.c at line 112 -------------------------------------------------------------------------- The application appears to have been direct launched using "srun", but OMPI was not built with SLURM's PMI support and therefore cannot execute. There are several options for building PMI support under SLURM, depending upon the SLURM version you are using:

version 16.05 or later: you can use SLURM's PMIx support. This requires that you configure and build SLURM --with-pmix.

Versions earlier than 16.05: you must use either SLURM's PMI-1 or PMI-2 support. SLURM builds PMI-1 by default, or you can manually install PMI-2. You must then build Open MPI using --with-pmi pointing to the SLURM PMI library location.

Please configure as appropriate and try again.

```
checking Rd files ... NOTE checkRd: (-1) hero.Rd:67-68: Lost braces 67 | then \code{\link[pbapply]{pblapply}} is used. If code{package == | ^ checkRd: (-1) hero.Rd:69: Lost braces 69 | code{package == "Rmpi"}, then \code{\link[Rmpi]{mpi.applyLB}} is used.} | ^

heterogen

Version: 1.2.33
GitHub: https://github.com/patauchi/heterogen
Source code: https://github.com/cran/heterogen
Date/Publication: 2023-08-17 07:42:33 UTC
Number of recursive dependencies: 55

Run revdepcheck::revdep_details(, "heterogen") for more info

checking installed package size ... NOTE installed size is 8.8Mb sub-directories of 1Mb or more: extdata 2.6Mb libs 6.0Mb

httpgd

Version: 2.0.4
GitHub: https://github.com/nx10/httpgd
Source code: https://github.com/cran/httpgd
Date/Publication: 2025-03-16 00:50:01 UTC
Number of recursive dependencies: 59

Run revdepcheck::revdep_details(, "httpgd") for more info

checking tests ... ``` Running ‘testthat.R’/software/c4/cbi/software/_rocky8/R-4.4.3-gcc13/lib64/R/bin/BATCH: line 60: 3838466 Aborted (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output:

library(testthat) library(httpgd)

test_check("httpgd") [ FAIL 12 | WARN 0 | SKIP 0 | PASS 2 ]

══ Failed tests ════════════════════════════════════════════════════════════════ terminate called after throwing an instance of 'std::system_error' what(): epoll: Too many open files ```
checking installed package size ... NOTE installed size is 12.6Mb sub-directories of 1Mb or more: libs 12.0Mb

hwep

Version: 2.0.2
GitHub: https://github.com/dcgerard/hwep
Source code: https://github.com/cran/hwep
Date/Publication: 2023-05-16 17:40:02 UTC
Number of recursive dependencies: 114

Run revdepcheck::revdep_details(, "hwep") for more info

checking installed package size ... NOTE installed size is 80.0Mb sub-directories of 1Mb or more: libs 79.4Mb
checking Rd files ... NOTE checkRd: (-1) simgl.Rd:50: Lost braces; missing escapes or markup? 50 | Uses the {updog} R package for simulating read counts and generating | ^
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

infercnv

Version: 1.22.0
GitHub: https://github.com/broadinstitute/inferCNV
Source code: https://github.com/cran/infercnv
Date/Publication: 2024-10-29
Number of recursive dependencies: 204

Run revdepcheck::revdep_details(, "infercnv") for more info

checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: extdata 3.1Mb
checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘HiddenMarkov:::makedensity’ See the note in ?`:::` about the use of this operator.
checking Rd files ... NOTE checkRd: (-1) run.Rd:268: Lost braces; missing escapes or markup? 268 | \item{require_DE_all_normals}{If mask_nonDE_genes is set, those genes will be masked only if they are are found as DE according to test.use and mask_nonDE_pval in each of the comparisons to normal cells options: {"any", "most", "all"} (default: "any") | ^

InPAS

Version: 2.14.1
GitHub: NA
Source code: https://github.com/cran/InPAS
Date/Publication: 2024-12-23
Number of recursive dependencies: 166

Run revdepcheck::revdep_details(, "InPAS") for more info

checking Rd cross-references ... WARNING ``` Missing link or links in Rd file 'get_ssRleCov.Rd': ‘[BSgenome:BSgenomeForge]{BSgenome::forgeBSgenomeDataPkg()}’

Missing link or links in Rd file 'set_globals.Rd': ‘[BSgenome:BSgenomeForge]{BSgenome::forgeBSgenomeDataPkg()}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking dependencies in R code ... NOTE There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘adjust_distalCPs’ ‘adjust_proximalCPs’ ‘adjust_proximalCPsByNBC’ ‘adjust_proximalCPsByPWM’ ‘calculate_mse’ ‘find_valleyBySpline’ ‘get_PAscore’ ‘get_PAscore2’ ‘remove_convergentUTR3s’ ‘search_distalCPs’ ‘search_proximalCPs’
checking Rd \usage sections ... NOTE ``` Documented arguments not in \usage in Rd file 'get_UTR3TotalCov.Rd': ‘gcCompensationensation’

Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. ```

interflex

Version: 1.2.6
GitHub: NA
Source code: https://github.com/cran/interflex
Date/Publication: 2021-05-18 11:40:02 UTC
Number of recursive dependencies: 91

Run revdepcheck::revdep_details(, "interflex") for more info

checking C++ specification ... NOTE Specified C++11: please drop specification unless essential
checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: libs 5.3Mb

ISAnalytics

Version: 1.16.1
GitHub: https://github.com/calabrialab/ISAnalytics
Source code: https://github.com/cran/ISAnalytics
Date/Publication: 2024-12-05
Number of recursive dependencies: 177

Run revdepcheck::revdep_details(, "ISAnalytics") for more info

checking installed package size ... NOTE installed size is 7.5Mb sub-directories of 1Mb or more: data 1.4Mb doc 3.8Mb
checking Rd files ... NOTE checkRd: (-1) refGenes_hg19.Rd:21: Lost braces; missing escapes or markup? 21 | \item Download from {http://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/} | ^

ivmte

Version: 1.4.0
GitHub: NA
Source code: https://github.com/cran/ivmte
Date/Publication: 2021-09-17 12:20:07 UTC
Number of recursive dependencies: 118

Run revdepcheck::revdep_details(, "ivmte") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'gurobi', 'cplexAPI'
checking Rd files ... NOTE checkRd: (-1) sTsls.Rd:17: Lost braces; missing escapes or markup? 17 | \item{pi}{the matrix E[XZ']E[ZZ']^{-1}} | ^ checkRd: (-1) sTslsSplines.Rd:20: Lost braces; missing escapes or markup? 20 | \item{pi}{matrix, corresponds to E[XZ']E[ZZ']^{-1}, the first stage | ^

JANE

Version: 1.0.0
GitHub: https://github.com/a1arakkal/JANE
Source code: https://github.com/cran/JANE
Date/Publication: 2025-03-22 18:00:02 UTC
Number of recursive dependencies: 53

Run revdepcheck::revdep_details(, "JANE") for more info

checking installed package size ... NOTE installed size is 16.5Mb sub-directories of 1Mb or more: libs 16.2Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

keyATM

Version: 0.5.2
GitHub: https://github.com/keyATM/keyATM
Source code: https://github.com/cran/keyATM
Date/Publication: 2024-04-24 14:50:06 UTC
Number of recursive dependencies: 100

Run revdepcheck::revdep_details(, "keyATM") for more info

checking installed package size ... NOTE installed size is 25.4Mb sub-directories of 1Mb or more: libs 24.9Mb

kmeRtone

Version: 1.0
GitHub: https://github.com/SahakyanLab/kmeRtone
Source code: https://github.com/cran/kmeRtone
Date/Publication: 2024-08-30 10:50:06 UTC
Number of recursive dependencies: 75

Run revdepcheck::revdep_details(, "kmeRtone") for more info

checking installed package size ... NOTE installed size is 9.9Mb sub-directories of 1Mb or more: libs 8.4Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

latentcor

Version: 2.0.1
GitHub: NA
Source code: https://github.com/cran/latentcor
Date/Publication: 2022-09-05 20:50:02 UTC
Number of recursive dependencies: 143

Run revdepcheck::revdep_details(, "latentcor") for more info

checking Rd files ... NOTE checkRd: (-1) evaluation.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly ... checkRd: (-1) gen_data.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gen_data.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_types.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) interpolation.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) interpolation.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly

ldsr

Version: 0.0.2
GitHub: https://github.com/ntthung/ldsr
Source code: https://github.com/cran/ldsr
Date/Publication: 2020-05-04 14:40:09 UTC
Number of recursive dependencies: 76

Run revdepcheck::revdep_details(, "ldsr") for more info

checking C++ specification ... NOTE Specified C++11: please drop specification unless essential
checking installed package size ... NOTE installed size is 5.5Mb sub-directories of 1Mb or more: libs 4.9Mb

lidR

Version: 4.1.2
GitHub: https://github.com/r-lidar/lidR
Source code: https://github.com/cran/lidR
Date/Publication: 2024-07-09 08:40:02 UTC
Number of recursive dependencies: 146

Run revdepcheck::revdep_details(, "lidR") for more info

checking tests ... ``` Running ‘testthat.R’/software/c4/cbi/software/_rocky8/R-4.4.3-gcc13/lib64/R/bin/BATCH: line 60: 551408 Aborted (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output:

Sys.setenv("R_TESTS" = "")

library(testthat) library(lidR) test_check("lidR") Tests using raster: terra Tests using future: TRUE Tests using OpenMP thread: 34 Tests using rlas: 1.8.0 OGR: Unsupported geometry type OGR: Unsupported geometry type Chunk 1 of 1 (100%): state ✓ terminate called after throwing an instance of 'std::length_error' what(): basic_string::_M_create ```
checking installed package size ... NOTE installed size is 19.1Mb sub-directories of 1Mb or more: R 1.0Mb doc 1.0Mb extdata 1.2Mb libs 15.4Mb

MAI

Version: 1.12.0
GitHub: https://github.com/KechrisLab/MAI
Source code: https://github.com/cran/MAI
Date/Publication: 2024-10-29
Number of recursive dependencies: 177

Run revdepcheck::revdep_details(, "MAI") for more info

checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file.

manynet

Version: 1.3.2
GitHub: https://github.com/stocnet/manynet
Source code: https://github.com/cran/manynet
Date/Publication: 2024-11-05 20:50:02 UTC
Number of recursive dependencies: 145

Run revdepcheck::revdep_details(, "manynet") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘Rgraphviz’
checking data for non-ASCII characters ... NOTE Note: found 7 marked UTF-8 strings

mapme.biodiversity

Version: 0.9.3
GitHub: https://github.com/mapme-initiative/mapme.biodiversity
Source code: https://github.com/cran/mapme.biodiversity
Date/Publication: 2024-10-21 08:10:02 UTC
Number of recursive dependencies: 106

Run revdepcheck::revdep_details(, "mapme.biodiversity") for more info

checking tests ... `` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-calc_deforestation_drivers.R:16:3'): deforestation drivers works ──.check_single_asset(result)produced warnings. ── Failure ('test-calc_deforestation_drivers.R:17:3'): deforestation drivers works ── unique(result$variable) (actual) not equal to c(...) (expected`).

... 12. │ └─jsonlite:::parseJSON(txt, bigint_as_char) 13. │ └─jsonlite:::parse_string(txt, bigint_as_char) 14. └─base::.handleSimpleError(...) 15. └─purrr (local) h(simpleError(msg, call)) 16. └─cli::cli_abort(...) 17. └─rlang::abort(...)

[ FAIL 5 | WARN 1 | SKIP 38 | PASS 560 ] Error: Test failures Execution halted ```

metaGE

Version: 1.2.1
GitHub: NA
Source code: https://github.com/cran/metaGE
Date/Publication: 2025-02-22 23:10:02 UTC
Number of recursive dependencies: 161

Run revdepcheck::revdep_details(, "metaGE") for more info

checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: data 4.2Mb

mikropml

Version: 1.6.1
GitHub: https://github.com/SchlossLab/mikropml
Source code: https://github.com/cran/mikropml
Date/Publication: 2023-08-21 15:10:05 UTC
Number of recursive dependencies: 130

Run revdepcheck::revdep_details(, "mikropml") for more info

checking Rd files ... NOTE checkRd: (-1) create_grouped_data_partition.Rd:60: Lost braces; missing escapes or markup? 60 | Zena Lapp, {zenalapp@umich.edu} | ^ checkRd: (-1) create_grouped_data_partition.Rd:62: Lost braces; missing escapes or markup? 62 | Kelly Sovacool, {sovacool@umich.edu} | ^ checkRd: (-1) create_grouped_k_multifolds.Rd:30: Lost braces; missing escapes or markup? 30 | Zena Lapp, {zenalapp@umich.edu} | ^ checkRd: (-1) get_partition_indices.Rd:58: Lost braces; missing escapes or markup? 58 | Kelly Sovacool, {sovacool@umich.edu} | ^ checkRd: (-1) set_hparams_glmnet.Rd:16: Lost braces; missing escapes or markup? 16 | Zena Lapp, {zenalapp@umich.edu} | ^

MineICA

Version: 1.46.0
GitHub: NA
Source code: https://github.com/cran/MineICA
Date/Publication: 2024-10-29
Number of recursive dependencies: 220

Run revdepcheck::revdep_details(, "MineICA") for more info

checking dependencies in R code ... WARNING Namespace in Imports field not imported from: ‘lumiHumanAll.db’ All declared Imports should be used. Packages in Depends field not imported from: ‘GOstats’ ‘Hmisc’ ‘JADE’ ‘RColorBrewer’ ‘Rgraphviz’ ‘annotate’ ‘biomaRt’ ‘cluster’ ‘colorspace’ ‘fastICA’ ‘foreach’ ‘ggplot2’ ‘graph’ ‘gtools’ ‘igraph’ ‘marray’ ‘mclust’ ‘methods’ ‘plyr’ ‘scales’ ‘xtable’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. Missing or unexported object: ‘GOstats::geneIdsByCategory’ ':::' calls which should be '::': ‘Biobase:::annotation<-’ ‘Biobase:::validMsg’ ‘fpc:::pamk’ ‘lumi:::getChipInfo’ ‘mclust:::adjustedRandIndex’ See the note in ?`:::` about the use of this operator. Unexported object imported by a ':::' call: ‘Biobase:::isValidVersion’ See the note in ?`:::` about the use of this operator.
checking Rd cross-references ... WARNING ``` Missing link or links in Rd file 'Alist.Rd': ‘class-IcaSet’

Missing link or links in Rd file 'Slist.Rd': ‘class-IcaSet’

Missing link or links in Rd file 'class-IcaSet.Rd': ‘class-IcaSet’

Missing link or links in Rd file 'getComp.Rd': ‘class-IcaSet’

Missing link or links in Rd file 'runAn.Rd': ‘[Category:class-GOHyperGParams]{GOHyperGParams}’

See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking for missing documentation entries ... WARNING Undocumented S4 classes: ‘MineICAParams’ All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘MineICA.Rnw’ using Sweave Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:
```
IQR, mad, sd, var, xtabs
```
... l.23 \usepackage {subfig}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘MineICA.Rnw’

SUMMARY: processing the following file failed: ‘MineICA.Rnw’

Error: Vignette re-building failed. Execution halted ```
checking package dependencies ... NOTE ``` Package which this enhances but not available for checking: ‘doMC’

Depends: includes the non-default packages: 'BiocGenerics', 'Biobase', 'plyr', 'ggplot2', 'scales', 'foreach', 'xtable', 'biomaRt', 'gtools', 'GOstats', 'cluster', 'marray', 'mclust', 'RColorBrewer', 'colorspace', 'igraph', 'Rgraphviz', 'graph', 'annotate', 'Hmisc', 'fastICA', 'JADE' Adding so many packages to the search path is excessive and importing selectively is preferable. ```
checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘biomaRt’ ‘GOstats’ ‘cluster’ ‘mclust’ ‘igraph’ A package should be listed in only one of these fields.
checking R code for possible problems ... NOTE addGenesToGoReport: no visible global function definition for ‘conditional’ addGenesToGoReport: no visible global function definition for ‘sigCategories’ annot2Color: no visible global function definition for ‘brewer.pal’ annot2Color: no visible global function definition for ‘heat_hcl’ annot2Color: no visible global function definition for ‘terrain_hcl’ annot2Color: no visible global function definition for ‘cm.colors’ annot2Color: no visible global function definition for ‘rainbow_hcl’ annotFeatures: no visible global function definition for ‘na.omit’ ... importFrom("methods", "callNextMethod", "new", "validObject") importFrom("stats", "aggregate", "as.dendrogram", "as.dist", "as.hclust", "chisq.test", "cor", "cor.test", "cutree", "dist", "hclust", "kmeans", "kruskal.test", "lm", "median", "na.omit", "order.dendrogram", "p.adjust", "quantile", "reorder", "shapiro.test", "wilcox.test") importFrom("utils", "capture.output", "combn", "read.table", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').
checking Rd files ... NOTE checkRd: (-1) clusterFastICARuns.Rd:47: Lost braces 47 | \item{...}{Additional parameters for code{funClus}} | ^ checkRd: (-1) clusterFastICARuns.Rd:52: Lost braces 52 | item{W}{the estimated unmixing matrix}, \item{Iq}{Iq | ^ checkRd: (-1) clusterFastICARuns.Rd:52: Lost braces 52 | item{W}{the estimated unmixing matrix}, \item{Iq}{Iq | ^ checkRd: (-1) plotDensOneAnnotInAllComp.Rd:104: Lost braces ... | ^ checkRd: (-1) runICA.Rd:44: Lost braces 44 | item{W}{the estimated unmixing matrix}} | ^ checkRd: (-1) runICA.Rd:44: Lost braces 44 | item{W}{the estimated unmixing matrix}} | ^ checkRd: (-1) writeProjByComp.Rd:38: Lost braces 38 | their annotations, please remember to modify code{genesPath(params)}, or | ^

missSBM

Version: 1.0.5
GitHub: https://github.com/grossSBM/missSBM
Source code: https://github.com/cran/missSBM
Date/Publication: 2025-03-13 08:30:02 UTC
Number of recursive dependencies: 112

Run revdepcheck::revdep_details(, "missSBM") for more info

checking installed package size ... NOTE installed size is 10.3Mb sub-directories of 1Mb or more: R 1.0Mb libs 8.0Mb

mistyR

Version: 1.14.0
GitHub: https://github.com/saezlab/mistyR
Source code: https://github.com/cran/mistyR
Date/Publication: 2024-10-29
Number of recursive dependencies: 153

Run revdepcheck::revdep_details(, "mistyR") for more info

checking R code for possible problems ... NOTE aggregate_results: no visible binding for global variable ‘measure’ aggregate_results: no visible binding for global variable ‘target’ aggregate_results: no visible binding for global variable ‘value’ aggregate_results: no visible binding for global variable ‘sd’ aggregate_results: no visible binding for global variable ‘view’ aggregate_results: no visible binding for global variable ‘.PT’ aggregate_results: no visible binding for global variable ‘Importance’ aggregate_results_subset: no visible binding for global variable ‘view’ aggregate_results_subset: no visible binding for global variable ‘.PT’ aggregate_results_subset: no visible binding for global variable ... run_misty : <anonymous>: no visible binding for global variable ‘multi.R2’ svm_model: no visible binding for global variable ‘index’ Undefined global functions or variables: .PT Importance Predictor Target fraction index intra.R2 intra.RMSE measure multi.R2 multi.RMSE nsamples p prediction sd target total ts value view Consider adding importFrom("stats", "sd", "ts") to your NAMESPACE file.
checking Rd files ... NOTE checkRd: (-1) collect_results.Rd:32: Lost braces; missing escapes or markup? 32 | for all performance measures for each {target} over all samples.} | ^

mlr3

Version: 0.23.0
GitHub: https://github.com/mlr-org/mlr3
Source code: https://github.com/cran/mlr3
Date/Publication: 2025-03-12 12:30:02 UTC
Number of recursive dependencies: 49

Run revdepcheck::revdep_details(, "mlr3") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘mlr3oml’

mlr3tuning

Version: 1.3.0
GitHub: https://github.com/mlr-org/mlr3tuning
Source code: https://github.com/cran/mlr3tuning
Date/Publication: 2024-12-17 12:10:06 UTC
Number of recursive dependencies: 98

Run revdepcheck::revdep_details(, "mlr3tuning") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘mlflow’

momentuHMM

Version: 1.5.5
GitHub: https://github.com/bmcclintock/momentuHMM
Source code: https://github.com/cran/momentuHMM
Date/Publication: 2022-10-18 20:52:35 UTC
Number of recursive dependencies: 152

Run revdepcheck::revdep_details(, "momentuHMM") for more info

checking installed package size ... NOTE installed size is 10.7Mb sub-directories of 1Mb or more: R 1.2Mb doc 1.7Mb libs 7.1Mb

MOSS

Version: 0.2.2
GitHub: https://github.com/agugonrey/MOSS
Source code: https://github.com/cran/MOSS
Date/Publication: 2022-03-25 15:50:05 UTC
Number of recursive dependencies: 182

Run revdepcheck::revdep_details(, "MOSS") for more info

checking Rd files ... NOTE checkRd: (-1) ssvdEN_sol_path.Rd:58: Lost braces; missing escapes or markup? 58 | \item{tol}{Convergence is determined when ||U_j - U_{j-1}||_F < tol, | ^ checkRd: (-1) ssvdEN_sol_path_par.Rd:59: Lost braces; missing escapes or markup? 59 | \item{tol}{Convergence is determined when ||U_j - U_{j-1}||_F < tol, | ^

multilevelcoda

Version: 1.3.1
GitHub: https://github.com/florale/multilevelcoda
Source code: https://github.com/cran/multilevelcoda
Date/Publication: 2024-11-23 15:30:06 UTC
Number of recursive dependencies: 169

Run revdepcheck::revdep_details(, "multilevelcoda") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 8.0Mb sub-directories of 1Mb or more: doc 6.4Mb

multitool

Version: 0.1.4
GitHub: https://github.com/ethan-young/multitool
Source code: https://github.com/cran/multitool
Date/Publication: 2024-02-08 17:40:02 UTC
Number of recursive dependencies: 152

Run revdepcheck::revdep_details(, "multitool") for more info

checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: doc 4.3Mb

nebula

Version: 1.5.3
GitHub: https://github.com/lhe17/nebula
Source code: https://github.com/cran/nebula
Date/Publication: 2024-02-15 23:00:02 UTC
Number of recursive dependencies: 172

Run revdepcheck::revdep_details(, "nebula") for more info

checking installed package size ... NOTE installed size is 35.4Mb sub-directories of 1Mb or more: libs 33.7Mb

nflfastR

Version: 5.0.0
GitHub: https://github.com/nflverse/nflfastR
Source code: https://github.com/cran/nflfastR
Date/Publication: 2024-11-26 23:10:02 UTC
Number of recursive dependencies: 87

Run revdepcheck::revdep_details(, "nflfastR") for more info

checking data for non-ASCII characters ... NOTE Note: found 1 marked UTF-8 string

nhdplusTools

Version: 1.3.1
GitHub: https://github.com/doi-usgs/nhdplusTools
Source code: https://github.com/cran/nhdplusTools
Date/Publication: 2025-02-14 23:20:02 UTC
Number of recursive dependencies: 138

Run revdepcheck::revdep_details(, "nhdplusTools") for more info

checking installed package size ... NOTE installed size is 7.4Mb sub-directories of 1Mb or more: data 1.6Mb doc 5.1Mb

oncomsm

Version: 0.1.4
GitHub: https://github.com/Boehringer-Ingelheim/oncomsm
Source code: https://github.com/cran/oncomsm
Date/Publication: 2023-04-17 07:00:02 UTC
Number of recursive dependencies: 125

Run revdepcheck::revdep_details(, "oncomsm") for more info

checking installed package size ... NOTE installed size is 64.0Mb sub-directories of 1Mb or more: doc 1.1Mb libs 61.8Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

OOS

Version: 1.0.0
GitHub: https://github.com/tylerJPike/OOS
Source code: https://github.com/cran/OOS
Date/Publication: 2021-03-17 13:20:20 UTC
Number of recursive dependencies: 137

Run revdepcheck::revdep_details(, "OOS") for more info

checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

OptimalGoldstandardDesigns

Version: 1.0.1
GitHub: https://github.com/jan-imbi/OptimalGoldstandardDesigns
Source code: https://github.com/cran/OptimalGoldstandardDesigns
Date/Publication: 2023-09-11 10:40:05 UTC
Number of recursive dependencies: 71

Run revdepcheck::revdep_details(, "OptimalGoldstandardDesigns") for more info

checking Rd files ... NOTE checkRd: (-1) calc_n_from_c.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Helper function to calculate other n's given n_{1,T} and allocation ratios} | ^ checkRd: (-1) calc_n_from_c.Rd:15: Lost braces; missing escapes or markup? 15 | Helper function to calculate other n's given n_{1,T} and allocation ratios | ^

PAMpal

Version: 1.4.4
GitHub: NA
Source code: https://github.com/cran/PAMpal
Date/Publication: 2025-03-04 00:20:02 UTC
Number of recursive dependencies: 123

Run revdepcheck::revdep_details(, "PAMpal") for more info

checking whether package ‘PAMpal’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/PAMpal/new/PAMpal.Rcheck/00install.out’ for details.

PAMscapes

Version: 0.10.0
GitHub: NA
Source code: https://github.com/cran/PAMscapes
Date/Publication: 2025-01-29 06:10:02 UTC
Number of recursive dependencies: 122

Run revdepcheck::revdep_details(, "PAMscapes") for more info

checking whether package ‘PAMscapes’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/PAMscapes/new/PAMscapes.Rcheck/00install.out’ for details.

pareg

Version: 1.8.0
GitHub: https://github.com/cbg-ethz/pareg
Source code: https://github.com/cran/pareg
Date/Publication: 2024-04-30
Number of recursive dependencies: 321

Run revdepcheck::revdep_details(, "pareg") for more info

checking examples ... ERROR ``` Running examples in ‘pareg-Ex.R’ failed The error most likely occurred in:

Name: as.data.frame.pareg

Title: as.data.frame for an object of class 'pareg'.

Aliases: as.data.frame.pareg

** Examples

df_genes <- data.frame( ... + ) fit <- pareg(df_genes, df_terms, max_iterations = 10) Error in py_module_import(module, convert = convert) : ModuleNotFoundError: No module named 'tensorflow' Run reticulate::py_last_error() for details. Error in .activate_fallback(proc, testload, env = env, envpath = envpath, : ModuleNotFoundError: No module named 'tensorflow' Run reticulate::py_last_error() for details. Calls: pareg -> basiliskStart -> .activate_fallback Execution halted ```
checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pareg) Loading required package: tensorflow Loading required package: tfprobability

... + testload = c("tensorflow", "tensorflow_probability") + ) Error in py_module_import(module, convert = convert) : ModuleNotFoundError: No module named 'tensorflow' Run reticulate::py_last_error() for details. Error in .activate_fallback(proc, testload, env = env, envpath = envpath, : ModuleNotFoundError: No module named 'tensorflow' Run reticulate::py_last_error() for details. Calls: -> .activate_fallback Execution halted ```
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘pareg.Rmd’ using rmarkdown The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pareg/new/pareg.Rcheck/vign_test/pareg/vignettes/pareg_files/figure-html/unnamed-chunk-4-1.png" but not available. The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pareg/new/pareg.Rcheck/vign_test/pareg/vignettes/pareg_files/figure-html/unnamed-chunk-5-1.png" but not available.

Quitting from pareg.Rmd:144-150 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in .activate_fallback(): ! ModuleNotFoundError: No module named 'tensorflow' ... --- re-building ‘pathway_similarities.Rmd’ using rmarkdown The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pareg/new/pareg.Rcheck/vign_test/pareg/vignettes/pathway_similarities_files/figure-html/unnamed-chunk-2-1.png" but not available. The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pareg/new/pareg.Rcheck/vign_test/pareg/vignettes/pathway_similarities_files/figure-html/unnamed-chunk-3-1.png" but not available. --- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed: ‘pareg.Rmd’

Error: Vignette re-building failed. Execution halted ```
checking for portable file names ... NOTE ``` Found the following non-portable file paths: pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_ablation_study/config.yaml pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_ablation_study/params.csv pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_dispersion_fitting/config.yaml pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_dispersion_fitting/params.csv pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_real_datasets/config.yaml pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_real_datasets/params.csv pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_regularization_effect/config.yaml pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_regularization_effect/params.csv pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_regularization_parameter/config.yaml ... pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_response_distribution/params.csv pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_similarity_measures/config.yaml pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_similarity_measures/params.csv pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/workflow/scripts/compare_rocauc_vs_loss.R pareg/inst/scripts/synthetic_benchmark/resources/multi_config_workflow/config_regularization_parameter

Tarballs are only required to store paths of up to 100 bytes and cannot store those of more than 256 bytes, with restrictions including to 100 bytes for the final component. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. ```
checking whether package ‘pareg’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/c4/home/henrik/futureverse/future/revdep/checks/pareg/new/pareg.Rcheck/00install.out’ for details.

partR2

Version: 0.9.2
GitHub: https://github.com/mastoffel/partR2
Source code: https://github.com/cran/partR2
Date/Publication: 2024-03-04 13:20:02 UTC
Number of recursive dependencies: 95

Run revdepcheck::revdep_details(, "partR2") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used.

pavo

Version: 2.9.0
GitHub: https://github.com/rmaia/pavo
Source code: https://github.com/cran/pavo
Date/Publication: 2023-09-24 10:10:02 UTC
Number of recursive dependencies: 98

Run revdepcheck::revdep_details(, "pavo") for more info

checking whether package ‘pavo’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/pavo/new/pavo.Rcheck/00install.out’ for details.

pgxRpi

Version: 1.2.3
GitHub: https://github.com/progenetix/pgxRpi
Source code: https://github.com/cran/pgxRpi
Date/Publication: 2025-02-13
Number of recursive dependencies: 159

Run revdepcheck::revdep_details(, "pgxRpi") for more info

checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Introduction_1_load_metadata.Rmd’ using rmarkdown The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pgxRpi/new/pgxRpi.Rcheck/vign_test/pgxRpi/vignettes/Introduction_1_load_metadata_files/figure-html/unnamed-chunk-12-1.png" but not available. --- finished re-building ‘Introduction_1_load_metadata.Rmd’

--- re-building ‘Introduction_2_query_variants.Rmd’ using rmarkdown

Quitting from Introduction_2_query_variants.Rmd:61-68 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ... The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pgxRpi/new/pgxRpi.Rcheck/vign_test/pgxRpi/vignettes/Introduction_4_process_pgxseg_files/figure-html/unnamed-chunk-14-1.png" but not available. The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pgxRpi/new/pgxRpi.Rcheck/vign_test/pgxRpi/vignettes/Introduction_4_process_pgxseg_files/figure-html/unnamed-chunk-15-1.png" but not available. The magick package is required to crop "/c4/home/henrik/futureverse/future/revdep/checks/pgxRpi/new/pgxRpi.Rcheck/vign_test/pgxRpi/vignettes/Introduction_4_process_pgxseg_files/figure-html/unnamed-chunk-16-1.png" but not available. --- finished re-building ‘Introduction_4_process_pgxseg.Rmd’

SUMMARY: processing the following file failed: ‘Introduction_2_query_variants.Rmd’

Error: Vignette re-building failed. Execution halted ```
checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: doc 5.8Mb
checking R code for possible problems ... NOTE pgxSegprocess: no visible binding for global variable ‘followup_state_id’ Undefined global functions or variables: followup_state_id

photosynthesis

Version: 2.1.5
GitHub: https://github.com/cdmuir/photosynthesis
Source code: https://github.com/cran/photosynthesis
Date/Publication: 2024-11-24 19:40:02 UTC
Number of recursive dependencies: 120

Run revdepcheck::revdep_details(, "photosynthesis") for more info

checking installed package size ... NOTE installed size is 7.3Mb sub-directories of 1Mb or more: doc 6.2Mb
checking data for non-ASCII characters ... NOTE Note: found 13 marked UTF-8 strings

phylolm

Version: 2.6.5
GitHub: https://github.com/lamho86/phylolm
Source code: https://github.com/cran/phylolm
Date/Publication: 2024-09-30 19:00:02 UTC
Number of recursive dependencies: 34

Run revdepcheck::revdep_details(, "phylolm") for more info

checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘geiger’, ‘caper’

pliman

Version: 3.0.0
GitHub: https://github.com/NA/NA
Source code: https://github.com/cran/pliman
Date/Publication: 2024-11-06 10:30:02 UTC
Number of recursive dependencies: 126

Run revdepcheck::revdep_details(, "pliman") for more info

checking installed package size ... NOTE installed size is 8.6Mb sub-directories of 1Mb or more: libs 5.4Mb tmp_images 1.9Mb

PLNmodels

Version: 1.2.2
GitHub: https://github.com/pln-team/PLNmodels
Source code: https://github.com/cran/PLNmodels
Date/Publication: 2025-03-21 17:40:06 UTC
Number of recursive dependencies: 146

Run revdepcheck::revdep_details(, "PLNmodels") for more info

checking installed package size ... NOTE installed size is 29.0Mb sub-directories of 1Mb or more: data 1.4Mb doc 2.4Mb libs 23.4Mb

polykde

Version: 1.0.0
GitHub: https://github.com/egarpor/polykde
Source code: https://github.com/cran/polykde
Date/Publication: 2025-02-17 11:00:01 UTC
Number of recursive dependencies: 171

Run revdepcheck::revdep_details(, "polykde") for more info

checking installed package size ... NOTE installed size is 11.1Mb sub-directories of 1Mb or more: libs 10.8Mb

portvine

Version: 1.0.3
GitHub: https://github.com/EmanuelSommer/portvine
Source code: https://github.com/cran/portvine
Date/Publication: 2024-01-18 16:30:02 UTC
Number of recursive dependencies: 130

Run revdepcheck::revdep_details(, "portvine") for more info

checking installed package size ... NOTE installed size is 53.8Mb sub-directories of 1Mb or more: libs 52.7Mb

ProFAST

Version: 1.5
GitHub: https://github.com/feiyoung/ProFAST
Source code: https://github.com/cran/ProFAST
Date/Publication: 2025-03-20 13:40:02 UTC
Number of recursive dependencies: 246

Run revdepcheck::revdep_details(, "ProFAST") for more info

checking installed package size ... NOTE installed size is 24.9Mb sub-directories of 1Mb or more: data 2.2Mb libs 22.2Mb

projpred

Version: 2.8.0
GitHub: https://github.com/stan-dev/projpred
Source code: https://github.com/cran/projpred
Date/Publication: 2023-12-15 00:00:02 UTC
Number of recursive dependencies: 160

Run revdepcheck::revdep_details(, "projpred") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: doc 1.4Mb libs 3.7Mb

Prostar

Version: 1.38.1
GitHub: https://github.com/edyp-lab/Prostar
Source code: https://github.com/cran/Prostar
Date/Publication: 2024-11-25
Number of recursive dependencies: 190

Run revdepcheck::revdep_details(, "Prostar") for more info

checking whether package ‘Prostar’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘future::reset’ by ‘shinyjs::reset’ when loading ‘Prostar’ See ‘/c4/home/henrik/futureverse/future/revdep/checks/Prostar/new/Prostar.Rcheck/00install.out’ for details.

checking for hidden files and directories ... NOTE Found the following hidden files and directories: docs/.nojekyll These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘DT’ ‘R.utils’ ‘RColorBrewer’ ‘XML’ ‘colourpicker’ ‘gtools’ ‘markdown’ ‘rclipboard’ ‘sass’ ‘shinyTree’ ‘shinyWidgets’ All declared Imports should be used.
checking files in ‘vignettes’ ... NOTE The following files look like leftovers/mistakes: ‘Prostar_UserManual.log’ Please remove them from your package.

psborrow2

Version: 0.0.4.0
GitHub: https://github.com/Genentech/psborrow2
Source code: https://github.com/cran/psborrow2
Date/Publication: 2025-02-12 15:20:02 UTC
Number of recursive dependencies: 155

Run revdepcheck::revdep_details(, "psborrow2") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’
checking installed package size ... NOTE installed size is 5.4Mb sub-directories of 1Mb or more: doc 3.9Mb

pseudohouseholds

Version: 0.1.1
GitHub: https://github.com/chris31415926535/pseudohouseholds
Source code: https://github.com/cran/pseudohouseholds
Date/Publication: 2023-07-19 09:30:02 UTC
Number of recursive dependencies: 103

Run revdepcheck::revdep_details(, "pseudohouseholds") for more info

checking data for non-ASCII characters ... NOTE Note: found 596 marked UTF-8 strings

qape

Version: 2.1
GitHub: NA
Source code: https://github.com/cran/qape
Date/Publication: 2023-08-21 14:10:12 UTC
Number of recursive dependencies: 42

Run revdepcheck::revdep_details(, "qape") for more info

checking Rd files ... NOTE checkRd: (-1) srswrRe.Rd:10: Lost braces 10 | \item{listRanef}{{\emph{ranef(model)}} object where {\emph{model}} is an { \emph{lmer}} object.} | ^

QDNAseq

Version: 1.42.0
GitHub: https://github.com/ccagc/QDNAseq
Source code: https://github.com/cran/QDNAseq
Date/Publication: 2024-10-29
Number of recursive dependencies: 94

Run revdepcheck::revdep_details(, "QDNAseq") for more info

checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘QDNAseq.Rnw’ using Sweave EM algorithm started ...

Warning in allprior/tot : Recycling array of length 1 in vector-array arithmetic is deprecated. Use c() or as.vector() instead. Warning in allprior/tot : Recycling array of length 1 in vector-array arithmetic is deprecated. Use c() or as.vector() instead. ... l.197 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘QDNAseq.Rnw’

SUMMARY: processing the following file failed: ‘QDNAseq.Rnw’

Error: Vignette re-building failed. Execution halted ```

RAINBOWR

Version: 0.1.35
GitHub: NA
Source code: https://github.com/cran/RAINBOWR
Date/Publication: 2024-03-03 09:12:36 UTC
Number of recursive dependencies: 153

Run revdepcheck::revdep_details(, "RAINBOWR") for more info

checking installed package size ... NOTE installed size is 42.9Mb sub-directories of 1Mb or more: libs 41.5Mb

receptiviti

Version: 0.1.8
GitHub: https://github.com/Receptiviti/receptiviti-r
Source code: https://github.com/cran/receptiviti
Date/Publication: 2024-03-29 18:00:03 UTC
Number of recursive dependencies: 65

Run revdepcheck::revdep_details(, "receptiviti") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(receptiviti) > > test_check("receptiviti") Status: ERROR Message: Invalid header received from client. ...
1. └─receptiviti::receptiviti(...) ── Failure ('test-receptiviti_status.R:5:3'): failures works ─────────────────── receptiviti_status(...) is not NULL
actual is a list expected is NULL

[ FAIL 2 | WARN 0 | SKIP 2 | PASS 6 ] Error: Test failures Execution halted ```

regmedint

Version: 1.0.1
GitHub: https://github.com/kaz-yos/regmedint
Source code: https://github.com/cran/regmedint
Date/Publication: 2024-01-13 00:50:02 UTC
Number of recursive dependencies: 156

Run revdepcheck::revdep_details(, "regmedint") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Deriv’ All declared Imports should be used.

reproducible

Version: 2.1.2
GitHub: https://github.com/PredictiveEcology/reproducible
Source code: https://github.com/cran/reproducible
Date/Publication: 2024-12-12 06:30:02 UTC
Number of recursive dependencies: 104

Run revdepcheck::revdep_details(, "reproducible") for more info

checking tests ... ``` Running ‘test-all.R’ ERROR Running the tests in ‘tests/test-all.R’ failed. Last 50 lines of output: 'test-preProcessWorks.R:328:3', 'test-preProcessWorks.R:348:3', 'test-preProcessWorks.R:361:3', 'test-preProcessWorks.R:374:3', 'test-preProcessWorks.R:391:3', 'test-preProcessWorks.R:409:3', 'test-preProcessWorks.R:438:3', 'test-preProcessWorks.R:459:3', 'test-preProcessWorks.R:487:3', 'test-preProcessWorks.R:543:3', 'test-preProcessWorks.R:569:3', 'test-preProcessWorks.R:672:3', ...
1. └─reproducible:::makeVal(x)
2. ├─terra::makeValid(x)
3. └─terra::makeValid(x)
4. └─terra (local) .local(x, ...)
5. └─terra:::messages(x)
6. └─terra:::error(f, x@pntr$getError())
[ FAIL 2 | WARN 0 | SKIP 90 | PASS 390 ] Error: Test failures Execution halted ```
checking package dependencies ... NOTE Package suggested but not available for checking: ‘archive’

rgee

Version: 1.1.7
GitHub: https://github.com/r-spatial/rgee
Source code: https://github.com/cran/rgee
Date/Publication: 2023-09-27 08:30:02 UTC
Number of recursive dependencies: 135

Run revdepcheck::revdep_details(, "rgee") for more info

checking installed package size ... NOTE installed size is 8.4Mb sub-directories of 1Mb or more: doc 6.9Mb
checking Rd files ... NOTE checkRd: (-1) ee_Authenticate.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Authenticate.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Authenticate.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Authenticate.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Authenticate.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Initialize.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Initialize.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Initialize.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Initialize.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_Initialize.Rd:53: Lost braces in \itemize; meant \describe ? ... checkRd: (-1) ee_imagecollection_to_local.Rd:105: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_imagecollection_to_local.Rd:106: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_imagecollection_to_local.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_imagecollection_to_local.Rd:108: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_install.Rd:35-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_install.Rd:38-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_install.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_install.Rd:41-44: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_install.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) ee_install.Rd:46: Lost braces in \itemize; meant \describe ?

rpm

Version: 0.7-3
GitHub: https://github.com/handcock/rpm
Source code: https://github.com/cran/rpm
Date/Publication: 2024-04-18 08:20:03 UTC
Number of recursive dependencies: 65

Run revdepcheck::revdep_details(, "rpm") for more info

checking installed package size ... NOTE installed size is 13.5Mb sub-directories of 1Mb or more: libs 12.9Mb

sapfluxnetr

Version: 0.1.4
GitHub: https://github.com/sapfluxnet/sapfluxnetr
Source code: https://github.com/cran/sapfluxnetr
Date/Publication: 2023-01-25 15:30:02 UTC
Number of recursive dependencies: 81

Run revdepcheck::revdep_details(, "sapfluxnetr") for more info

checking data for non-ASCII characters ... NOTE Note: found 4 marked UTF-8 strings

SCArray.sat

Version: 1.6.0
GitHub: https://github.com/AbbVie-ComputationalGenomics/SCArray
Source code: https://github.com/cran/SCArray.sat
Date/Publication: 2024-10-29
Number of recursive dependencies: 183

Run revdepcheck::revdep_details(, "SCArray.sat") for more info

checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘Seurat:::DEmethods_counts’ ‘Seurat:::DEmethods_nocorrect’ ‘Seurat:::FastExpMean’ ‘Seurat:::FastLogVMR’ ‘Seurat:::NBResiduals’ ‘Seurat:::UpdateKey’ ‘Seurat:::ValidateDataForMerge’ See the note in ?`:::` about the use of this operator.

sctransform

Version: 0.4.1
GitHub: https://github.com/satijalab/sctransform
Source code: https://github.com/cran/sctransform
Date/Publication: 2023-10-19 04:40:02 UTC
Number of recursive dependencies: 67

Run revdepcheck::revdep_details(, "sctransform") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘glmGamPoi’

sdmTMB

Version: 0.6.0
GitHub: https://github.com/pbs-assess/sdmTMB
Source code: https://github.com/cran/sdmTMB
Date/Publication: 2024-05-30 00:00:02 UTC
Number of recursive dependencies: 150

Run revdepcheck::revdep_details(, "sdmTMB") for more info

checking installed package size ... NOTE installed size is 97.8Mb sub-directories of 1Mb or more: libs 95.9Mb

sentopics

Version: 0.7.4
GitHub: https://github.com/odelmarcelle/sentopics
Source code: https://github.com/cran/sentopics
Date/Publication: 2024-09-20 12:20:02 UTC
Number of recursive dependencies: 172

Run revdepcheck::revdep_details(, "sentopics") for more info

checking installed package size ... NOTE installed size is 8.3Mb sub-directories of 1Mb or more: data 1.2Mb libs 6.2Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘lexicon’
checking data for non-ASCII characters ... NOTE Note: found 3128 marked UTF-8 strings

Seurat

Version: 5.2.1
GitHub: https://github.com/satijalab/seurat
Source code: https://github.com/cran/Seurat
Date/Publication: 2025-01-24 06:50:06 UTC
Number of recursive dependencies: 281

Run revdepcheck::revdep_details(, "Seurat") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'BPCells', 'hdf5r', 'presto'
checking installed package size ... NOTE installed size is 16.1Mb sub-directories of 1Mb or more: R 1.7Mb libs 13.4Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘Signac’

SeuratObject

Version: 5.0.2
GitHub: https://github.com/satijalab/seurat-object
Source code: https://github.com/cran/SeuratObject
Date/Publication: 2024-05-08 13:40:06 UTC
Number of recursive dependencies: 101

Run revdepcheck::revdep_details(, "SeuratObject") for more info

checking package dependencies ... NOTE ``` Package suggested but not available for checking: ‘BPCells’

Package which this enhances but not available for checking: ‘Seurat’ ```
checking installed package size ... NOTE installed size is 5.5Mb sub-directories of 1Mb or more: R 1.5Mb libs 3.2Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘plotly’

shapr

Version: 1.0.3
GitHub: https://github.com/NorskRegnesentral/shapr
Source code: https://github.com/cran/shapr
Date/Publication: 2025-03-26 17:10:02 UTC
Number of recursive dependencies: 167

Run revdepcheck::revdep_details(, "shapr") for more info

checking installed package size ... NOTE installed size is 13.8Mb sub-directories of 1Mb or more: doc 4.6Mb libs 8.0Mb
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘devtools’

sharp

Version: 1.4.6
GitHub: https://github.com/barbarabodinier/sharp
Source code: https://github.com/cran/sharp
Date/Publication: 2024-02-03 17:30:02 UTC
Number of recursive dependencies: 158

Run revdepcheck::revdep_details(, "sharp") for more info

checking package dependencies ... NOTE Package suggested but not available for checking: ‘rCOSA’
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘rCOSA’

shiny

Version: 1.10.0
GitHub: https://github.com/rstudio/shiny
Source code: https://github.com/cran/shiny
Date/Publication: 2024-12-14 00:10:02 UTC
Number of recursive dependencies: 94

Run revdepcheck::revdep_details(, "shiny") for more info

checking installed package size ... NOTE installed size is 13.7Mb sub-directories of 1Mb or more: R 1.5Mb www 10.4Mb

shiny.worker

Version: 0.0.1
GitHub: NA
Source code: https://github.com/cran/shiny.worker
Date/Publication: 2021-01-21 11:00:02 UTC
Number of recursive dependencies: 57

Run revdepcheck::revdep_details(, "shiny.worker") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘shiny’ All declared Imports should be used.
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

sigminer

Version: 2.3.1
GitHub: https://github.com/ShixiangWang/sigminer
Source code: https://github.com/cran/sigminer
Date/Publication: 2024-05-11 08:50:02 UTC
Number of recursive dependencies: 213

Run revdepcheck::revdep_details(, "sigminer") for more info

checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: extdata 1.0Mb help 1.7Mb libs 1.6Mb

Signac

Version: 1.14.0
GitHub: https://github.com/stuart-lab/signac
Source code: https://github.com/cran/Signac
Date/Publication: 2024-08-21 07:40:02 UTC
Number of recursive dependencies: 246

Run revdepcheck::revdep_details(, "Signac") for more info

checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: R 1.1Mb libs 2.9Mb

signeR

Version: 2.8.0
GitHub: https://github.com/TojalLab/signeR
Source code: https://github.com/cran/signeR
Date/Publication: 2024-10-29
Number of recursive dependencies: 238

Run revdepcheck::revdep_details(, "signeR") for more info

checking C++ specification ... NOTE Specified C++11: please drop specification unless essential
checking installed package size ... NOTE installed size is 7.3Mb sub-directories of 1Mb or more: R 1.2Mb doc 5.2Mb
checking R code for possible problems ... NOTE covariate: no visible binding for global variable ‘.’ explorepage: no visible binding for global variable ‘.’ genCountMatrixFromMAF: no visible binding for global variable ‘Variant_Type’ genCountMatrixFromMAF: no visible binding for global variable ‘Reference_Allele’ genCountMatrixFromMAF: no visible binding for global variable ‘Tumor_Seq_Allele2’ genCountMatrixFromMAF: no visible binding for global variable ‘Tumor_Seq_Allele1’ ... ExposureCorrelation,SignExp-numeric: no visible binding for global variable ‘exposure’ ExposureCorrelation,matrix-numeric: no visible binding for global variable ‘Feature’ ExposureCorrelation,matrix-numeric: no visible binding for global variable ‘exposure’ Undefined global functions or variables: . Col Feature Frequency Reference_Allele Row Samples Signatures Tumor_Seq_Allele1 Tumor_Seq_Allele2 Variant_Type alt<- exposure fc project sig sig_test
checking Rd files ... NOTE prepare_Rd: cosmic_data.Rd:91-93: Dropping empty section \details prepare_Rd: cosmic_data.Rd:98-100: Dropping empty section \references prepare_Rd: cosmic_data.Rd:101-102: Dropping empty section \examples prepare_Rd: tcga_similarities.Rd:96-98: Dropping empty section \details prepare_Rd: tcga_similarities.Rd:99-101: Dropping empty section \source prepare_Rd: tcga_similarities.Rd:102-104: Dropping empty section \references prepare_Rd: tcga_similarities.Rd:105-106: Dropping empty section \examples prepare_Rd: tcga_tumors.Rd:18-20: Dropping empty section \details prepare_Rd: tcga_tumors.Rd:21-23: Dropping empty section \source prepare_Rd: tcga_tumors.Rd:24-26: Dropping empty section \references prepare_Rd: tcga_tumors.Rd:27-28: Dropping empty section \examples

SimDesign

Version: 2.19.1
GitHub: https://github.com/philchalmers/SimDesign
Source code: https://github.com/cran/SimDesign
Date/Publication: 2025-03-17 12:40:02 UTC
Number of recursive dependencies: 138

Run revdepcheck::revdep_details(, "SimDesign") for more info

checking installed package size ... NOTE installed size is 7.5Mb sub-directories of 1Mb or more: doc 6.6Mb

sims

Version: 0.0.4
GitHub: https://github.com/poissonconsulting/sims
Source code: https://github.com/cran/sims
Date/Publication: 2024-09-18 16:30:07 UTC
Number of recursive dependencies: 79

Run revdepcheck::revdep_details(, "sims") for more info

checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: Backtrace: ▆
1. ├─testthat::expect_equal(...) at test-simulate.R:938:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─sims::sims_simulate(...) ...
5. └─sims::sims_simulate("a ~ dunif(0,1)", nsims = 1L)
6. └─sims:::generate_datasets(...)
7. └─future.apply::future_lapply(...)
8. └─future.apply:::future_xapply(...)
9. ├─future::value(fs)
10. └─future:::value.list(fs)
[ FAIL 33 | WARN 0 | SKIP 1 | PASS 73 ] Error: Test failures Execution halted ```

simtrial

Version: 0.4.2
GitHub: https://github.com/Merck/simtrial
Source code: https://github.com/cran/simtrial
Date/Publication: 2024-11-18 15:10:02 UTC
Number of recursive dependencies: 115

Run revdepcheck::revdep_details(, "simtrial") for more info

checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘gsDesign2’ All declared Imports should be used.

skpr

Version: 1.7.1
GitHub: https://github.com/tylermorganwall/skpr
Source code: https://github.com/cran/skpr
Date/Publication: 2024-03-26 01:30:02 UTC
Number of recursive dependencies: 157

Run revdepcheck::revdep_details(, "skpr") for more info

checking installed package size ... NOTE installed size is 59.6Mb sub-directories of 1Mb or more: libs 59.0Mb

SmCCNet

Version: 2.0.3
GitHub: https://github.com/KechrisLab/SmCCNet
Source code: https://github.com/cran/SmCCNet
Date/Publication: 2024-04-16 05:20:02 UTC
Number of recursive dependencies: 162

Run revdepcheck::revdep_details(, "SmCCNet") for more info

checking re-building of vignette outputs ... WARNING `` Error(s) in re-building vignettes: --- re-building ‘SmCCNet_Vignette_AutoSmCCNet.Rmd’ using rmarkdown ! LaTeX Error: Fileucharcat.sty' not found.

! Emergency stop.

Error: processing vignette 'SmCCNet_Vignette_AutoSmCCNet.Rmd' failed with diagnostics: LaTeX failed to compile /c4/home/henrik/futureverse/future/revdep/checks/SmCCNet/new/SmCCNet.Rcheck/vign_test/SmCCNet/vignettes/SmCCNet_Vignette_AutoSmCCNet.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See SmCCNet_Vignette_AutoSmCCNet.log for more info. --- failed re-building ‘SmCCNet_Vignette_AutoSmCCNet.Rmd’ ... Error: processing vignette 'SmCCNet_Vignette_SingleOmics.Rmd' failed with diagnostics: LaTeX failed to compile /c4/home/henrik/futureverse/future/revdep/checks/SmCCNet/new/SmCCNet.Rcheck/vign_test/SmCCNet/vignettes/SmCCNet_Vignette_SingleOmics.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See SmCCNet_Vignette_SingleOmics.log for more info. --- failed re-building ‘SmCCNet_Vignette_SingleOmics.Rmd’

SUMMARY: processing the following files failed: ‘SmCCNet_Vignette_AutoSmCCNet.Rmd’ ‘SmCCNet_Vignette_MultiOmics.Rmd’ ‘SmCCNet_Vignette_SingleOmics.Rmd’

Error: Vignette re-building failed. Execution halted ```

smoots

Version: 1.1.4
GitHub: NA
Source code: https://github.com/cran/smoots
Date/Publication: 2023-09-11 08:50:02 UTC
Number of recursive dependencies: 70

Run revdepcheck::revdep_details(, "smoots") for more info

checking installed package size ... NOTE installed size is 5.4Mb sub-directories of 1Mb or more: libs 4.6Mb

solitude

Version: 1.1.3
GitHub: https://github.com/talegari/solitude
Source code: https://github.com/cran/solitude
Date/Publication: 2021-07-29 20:00:02 UTC
Number of recursive dependencies: 131

Run revdepcheck::revdep_details(, "solitude") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘lgr’ All declared Imports should be used.

SpaDES.core

Version: 2.1.0
GitHub: https://github.com/PredictiveEcology/SpaDES.core
Source code: https://github.com/cran/SpaDES.core
Date/Publication: 2024-06-02 11:02:47 UTC
Number of recursive dependencies: 135

Run revdepcheck::revdep_details(, "SpaDES.core") for more info

checking package dependencies ... NOTE Packages suggested but not available for checking: 'archive', 'NLMR'
checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: R 5.1Mb

spaMM

Version: 4.5.0
GitHub: NA
Source code: https://github.com/cran/spaMM
Date/Publication: 2024-06-09 22:20:02 UTC
Number of recursive dependencies: 88

Run revdepcheck::revdep_details(, "spaMM") for more info

checking package dependencies ... NOTE ``` Package suggested but not available for checking: ‘IsoriX’

Packages which this enhances but not available for checking: 'multcomp', 'RLRsim', 'lmerTest' ```
checking installed package size ... NOTE installed size is 54.4Mb sub-directories of 1Mb or more: R 2.8Mb libs 50.2Mb

sparrpowR

Version: 0.2.8
GitHub: https://github.com/machiela-lab/sparrpowR
Source code: https://github.com/cran/sparrpowR
Date/Publication: 2024-01-23 15:20:02 UTC
Number of recursive dependencies: 130

Run revdepcheck::revdep_details(, "sparrpowR") for more info

checking whether package ‘sparrpowR’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/sparrpowR/new/sparrpowR.Rcheck/00install.out’ for details.

SPARSEMODr

Version: 1.2.0
GitHub: https://github.com/NAU-CCL/SPARSEMODr
Source code: https://github.com/cran/SPARSEMODr
Date/Publication: 2022-07-19 20:50:02 UTC
Number of recursive dependencies: 126

Run revdepcheck::revdep_details(, "SPARSEMODr") for more info

checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘geosphere’ ‘lubridate’ ‘tidyverse’ ‘viridis’ All declared Imports should be used.

spatialwarnings

Version: 3.1.0
GitHub: https://github.com/spatial-ews/spatialwarnings
Source code: https://github.com/cran/spatialwarnings
Date/Publication: 2024-09-06 14:50:02 UTC
Number of recursive dependencies: 96

Run revdepcheck::revdep_details(, "spatialwarnings") for more info

checking installed package size ... NOTE installed size is 8.1Mb sub-directories of 1Mb or more: libs 6.7Mb

sperrorest

Version: 3.0.5
GitHub: https://github.com/giscience-fsu/sperrorest
Source code: https://github.com/cran/sperrorest
Date/Publication: 2022-10-16 12:50:02 UTC
Number of recursive dependencies: 73

Run revdepcheck::revdep_details(, "sperrorest") for more info

checking Rd files ... NOTE checkRd: (-1) partition_cv.Rd:36: Lost braces; missing escapes or markup? 36 | if \code{TRUE} (used internally by other {sperrorest} functions), return a | ^ checkRd: (-1) partition_cv_strat.Rd:28: Lost braces; missing escapes or markup? 28 | if \code{TRUE} (used internally by other {sperrorest} functions), return a | ^ checkRd: (-1) partition_factor.Rd:28: Lost braces; missing escapes or markup? 28 | if \code{TRUE} (used internally by other {sperrorest} functions), return a | ^ checkRd: (-1) partition_factor_cv.Rd:43: Lost braces; missing escapes or markup? ... | ^ checkRd: (-1) sperrorest.Rd:148: Lost braces; missing escapes or markup? 148 | information about the {sperrorest} package version | ^ checkRd: (-1) summary.sperroresterror.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Summarize error statistics obtained by {sperrorest}} | ^ checkRd: (-1) summary.sperrorestimportance.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Summarize variable importance statistics obtained by {sperrorest}} | ^

sphunif

Version: 1.4.0
GitHub: https://github.com/egarpor/sphunif
Source code: https://github.com/cran/sphunif
Date/Publication: 2024-05-24 21:50:01 UTC
Number of recursive dependencies: 71

Run revdepcheck::revdep_details(, "sphunif") for more info

checking installed package size ... NOTE installed size is 25.9Mb sub-directories of 1Mb or more: libs 24.8Mb
checking data for non-ASCII characters ... NOTE Note: found 189 marked UTF-8 strings

spNetwork

Version: 0.4.4.5
GitHub: https://github.com/JeremyGelb/spNetwork
Source code: https://github.com/cran/spNetwork
Date/Publication: 2025-01-20 11:30:03 UTC
Number of recursive dependencies: 152

Run revdepcheck::revdep_details(, "spNetwork") for more info

checking installed package size ... NOTE installed size is 27.6Mb sub-directories of 1Mb or more: doc 1.1Mb extdata 2.6Mb libs 22.4Mb

squat

Version: 0.3.0
GitHub: https://github.com/LMJL-Alea/squat
Source code: https://github.com/cran/squat
Date/Publication: 2024-01-10 15:40:02 UTC
Number of recursive dependencies: 140

Run revdepcheck::revdep_details(, "squat") for more info

checking examples ... ERROR ``` Running examples in ‘squat-Ex.R’ failed The error most likely occurred in:

Name: autoplot.qtsclust

Title: Plot for 'qtsclust' objects

Aliases: autoplot.qtsclust

** Examples

Don't show:

... 3. │ ├─base::withVisible(eval(ei, envir)) 4. │ └─base::eval(ei, envir) 5. │ └─base::eval(ei, envir) 6. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) 7. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2) 8. └─fdacluster::fdakmeans(...) 9. └─fdacluster:::check_option_compatibility(...) 10. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.") 11. └─rlang::abort(...) Execution halted ```
checking tests ... `` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: transformation = transformation, warping_class = warping_class, metric = metric): The L2 metric is neither dilation-invariant nor affine-invariant. Backtrace: ▆
1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3
2. │ └─withr::with_preserve_seed(...) ... Deleting unused snapshots: • qts-class/qts-plot-with-change-points.svg • qts-kmeans/k-means-plot.svg • qts-prcomp/colored-score-plot.svg • qts-prcomp/score-plot.svg • qts-prcomp/screeplot.svg • qts-sample-class/qts-sample-plot-with-highlighted-observations.svg • qts-sample-class/qts-sample-plot-with-memberships.svg Error: Test failures Execution halted ```
checking installed package size ... NOTE installed size is 19.9Mb sub-directories of 1Mb or more: data 1.1Mb help 1.1Mb libs 17.5Mb

ssdtools

Version: 2.3.0
GitHub: https://github.com/bcgov/ssdtools
Source code: https://github.com/cran/ssdtools
Date/Publication: 2025-02-20 13:20:02 UTC
Number of recursive dependencies: 128

Run revdepcheck::revdep_details(, "ssdtools") for more info

checking installed package size ... NOTE installed size is 38.5Mb sub-directories of 1Mb or more: libs 37.3Mb

stars

Version: 0.6-8
GitHub: https://github.com/r-spatial/stars
Source code: https://github.com/cran/stars
Date/Publication: 2025-02-01 18:50:02 UTC
Number of recursive dependencies: 165

Run revdepcheck::revdep_details(, "stars") for more info

checking tests ... Running ‘aggregate.R’ Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ... OK Running ‘align.R’ Comparing ‘align.Rout’ to ‘align.Rout.save’ ... OK Running ‘area.R’ Comparing ‘area.Rout’ to ‘area.Rout.save’ ... OK Running ‘crop.R’ Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK Running ‘curvilinear.R’ Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ... OK ... > > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) > sfc = st_sfc(st_point(0:1), st_point(3:2)) > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) > s = st_set_dimensions(s, 2, tm) > f = tempfile(fileext = ".nc") > write_mdim(s, f, as_float = FALSE) Error: requires GDAL >= 3.1.0 and 64-bit Execution halted
checking package dependencies ... NOTE Package suggested but not available for checking: ‘starsdata’
checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: doc 2.9Mb nc 1.7Mb

stppSim

Version: 1.3.4
GitHub: https://github.com/Manalytics/stppSim
Source code: https://github.com/cran/stppSim
Date/Publication: 2024-07-24 13:30:02 UTC
Number of recursive dependencies: 131

Run revdepcheck::revdep_details(, "stppSim") for more info

checking whether package ‘stppSim’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/stppSim/new/stppSim.Rcheck/00install.out’ for details.

survstan

Version: 0.0.7.1
GitHub: https://github.com/fndemarqui/survstan
Source code: https://github.com/cran/survstan
Date/Publication: 2024-04-12 16:50:02 UTC
Number of recursive dependencies: 116

Run revdepcheck::revdep_details(, "survstan") for more info

checking installed package size ... NOTE installed size is 85.6Mb sub-directories of 1Mb or more: libs 85.0Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RcppParallel’ ‘rstantools’ All declared Imports should be used.
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

synergyfinder

Version: 3.14.0
GitHub: NA
Source code: https://github.com/cran/synergyfinder
Date/Publication: 2024-10-29
Number of recursive dependencies: 199

Run revdepcheck::revdep_details(, "synergyfinder") for more info

checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘scales’ Namespaces in Imports field not imported from: ‘future’ ‘gstat’ ‘nleqslv’ ‘sp’ ‘tidyverse’ All declared Imports should be used.
checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: doc 5.8Mb
checking R code for possible problems ... NOTE .Extract2DrugPlotData: no visible binding for global variable ‘input_type’ .Extract2DrugPlotData: no visible binding for global variable ‘block_id’ .Extract2DrugPlotData: no visible binding for global variable ‘value’ .Extract2DrugPlotData: no visible binding for global variable ‘left’ .Extract2DrugPlotData: no visible binding for global variable ‘right’ .Extract2DrugPlotData: no visible binding for global variable ‘conc1’ .Extract2DrugPlotData: no visible binding for global variable ‘conc2’ .Extract2DrugPlotData: no visible binding for global variable ‘text’ ... response_CI95 response_mean response_origin response_origin_CI95 response_origin_mean response_origin_sd response_origin_sem response_sd response_sem right start synergy t.test text theta value x y Consider adding importFrom("grDevices", "dev.list", "dev.off") importFrom("graphics", "text") importFrom("stats", "end", "predict", "start", "t.test") importFrom("utils", "data", "head") to your NAMESPACE file.
checking Rd files ... NOTE checkRd: (-1) FitDoseResponse.Rd:54: Lost braces 54 | href{https://onlinelibrary.wiley.com/doi/book/10.1002/0471725315}{Nonlinear | ^ checkRd: (-1) FitDoseResponse.Rd:54-55: Lost braces 54 | href{https://onlinelibrary.wiley.com/doi/book/10.1002/0471725315}{Nonlinear | ^ checkRd: (-1) FitDoseResponse.Rd:55: Escaped LaTeX specials: \& checkRd: (-1) PlotBarometer.Rd:118: Lost braces 118 | href{https://www.frontiersin.org/articles/10.3389/fphar.2015.00181/full}{What | ^ checkRd: (-1) PlotBarometer.Rd:118-119: Lost braces 118 | href{https://www.frontiersin.org/articles/10.3389/fphar.2015.00181/full}{What | ^ checkRd: (-1) PlotDoseResponseCurve.Rd:84: Lost braces 84 | link[drc]{plot.drc} function. For example, use xlim = c(0.5, 500) or | ^

tableschema.r

Version: 1.1.2
GitHub: https://github.com/frictionlessdata/tableschema-r
Source code: https://github.com/cran/tableschema.r
Date/Publication: 2022-09-29 20:00:03 UTC
Number of recursive dependencies: 60

Run revdepcheck::revdep_details(, "tableschema.r") for more info

checking Rd files ... NOTE checkRd: (-1) Field.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:72: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:78-80: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:82: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:88: Lost braces in \itemize; meant \describe ? checkRd: (-1) Field.Rd:89: Lost braces in \itemize; meant \describe ? ... checkRd: (-1) Table.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) tableschema.r-package.Rd:174: Lost braces 174 | in the resources array of a href{http://frictionlessdata.io/specs/data-package/}{Data Package}. | ^ checkRd: (-1) tableschema.r-package.Rd:174: Lost braces 174 | in the resources array of a href{http://frictionlessdata.io/specs/data-package/}{Data Package}. | ^ checkRd: (-1) types.castDate.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) types.castDate.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) types.castDate.Rd:16: Lost braces in \itemize; meant \describe ?
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘parsedate’

targeted

Version: 0.5
GitHub: https://github.com/kkholst/targeted
Source code: https://github.com/cran/targeted
Date/Publication: 2024-02-22 10:00:21 UTC
Number of recursive dependencies: 90

Run revdepcheck::revdep_details(, "targeted") for more info

checking installed package size ... NOTE installed size is 23.2Mb sub-directories of 1Mb or more: doc 1.1Mb libs 21.5Mb

targets

Version: 1.10.1
GitHub: https://github.com/ropensci/targets
Source code: https://github.com/cran/targets
Date/Publication: 2025-01-31 16:50:02 UTC
Number of recursive dependencies: 158

Run revdepcheck::revdep_details(, "targets") for more info

checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘qs’

tenm

Version: 0.5.1
GitHub: https://github.com/luismurao/tenm
Source code: https://github.com/cran/tenm
Date/Publication: 2024-07-23 00:30:01 UTC
Number of recursive dependencies: 78

Run revdepcheck::revdep_details(, "tenm") for more info

checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: extdata 5.0Mb

text

Version: 1.4
GitHub: https://github.com/OscarKjell/text
Source code: https://github.com/cran/text
Date/Publication: 2025-03-18 13:00:02 UTC
Number of recursive dependencies: 193

Run revdepcheck::revdep_details(, "text") for more info

checking data for non-ASCII characters ... NOTE Note: found 3 marked UTF-8 strings

tglkmeans

Version: 0.5.5
GitHub: https://github.com/tanaylab/tglkmeans
Source code: https://github.com/cran/tglkmeans
Date/Publication: 2024-05-15 08:40:02 UTC
Number of recursive dependencies: 89

Run revdepcheck::revdep_details(, "tglkmeans") for more info

checking installed package size ... NOTE installed size is 5.3Mb sub-directories of 1Mb or more: libs 5.0Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘doRNG’ All declared Imports should be used.
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

tramvs

Version: 0.0-7
GitHub: NA
Source code: https://github.com/cran/tramvs
Date/Publication: 2025-01-31 10:10:02 UTC
Number of recursive dependencies: 104

Run revdepcheck::revdep_details(, "tramvs") for more info

checking re-building of vignette outputs ... WARNING `` Error(s) in re-building vignettes: ... --- re-building ‘tramvs.Rnw’ using knitr Warning in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : texi2dvi script/program not available, using emulation Error: processing vignette 'tramvs.Rnw' failed with diagnostics: unable to run pdflatex on 'tramvs.tex' LaTeX errors: ! LaTeX Error: Filewrapfig.sty' not found.

... l.68 \usepackage {float}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘tramvs.Rnw’

SUMMARY: processing the following file failed: ‘tramvs.Rnw’

Error: Vignette re-building failed. Execution halted ```

TreeMineR

Version: 1.0.2
GitHub: https://github.com/entjos/TreeMineR
Source code: https://github.com/cran/TreeMineR
Date/Publication: 2024-08-27 15:00:11 UTC
Number of recursive dependencies: 48

Run revdepcheck::revdep_details(, "TreeMineR") for more info

checking data for non-ASCII characters ... NOTE Note: found 3 marked UTF-8 strings

TreeSearch

Version: 1.5.1
GitHub: https://github.com/ms609/TreeSearch
Source code: https://github.com/cran/TreeSearch
Date/Publication: 2024-05-23 13:40:03 UTC
Number of recursive dependencies: 123

Run revdepcheck::revdep_details(, "TreeSearch") for more info

checking installed package size ... NOTE installed size is 7.7Mb sub-directories of 1Mb or more: datasets 1.6Mb doc 1.3Mb libs 3.1Mb

TriDimRegression

Version: 1.0.2
GitHub: https://github.com/alexander-pastukhov/tridim-regression
Source code: https://github.com/cran/TriDimRegression
Date/Publication: 2023-09-13 14:10:03 UTC
Number of recursive dependencies: 98

Run revdepcheck::revdep_details(, "TriDimRegression") for more info

checking whether package ‘TriDimRegression’ can be installed ... ERROR Installation failed. See ‘/c4/home/henrik/futureverse/future/revdep/checks/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details.

* installing *source* package ‘TriDimRegression’ ...
** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked
** using staged installation
Error in loadNamespace(x) : there is no package called ‘rstantools’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: configuration failed for package ‘TriDimRegression’
* removing ‘/c4/home/henrik/futureverse/future/revdep/checks/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’

* installing *source* package ‘TriDimRegression’ ...
** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked
** using staged installation
Error in loadNamespace(x) : there is no package called ‘rstantools’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: configuration failed for package ‘TriDimRegression’
* removing ‘/c4/home/henrik/futureverse/future/revdep/checks/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’

tsdistributions

Version: 1.0.2
GitHub: https://github.com/tsmodels/tsdistributions
Source code: https://github.com/cran/tsdistributions
Date/Publication: 2024-08-23 04:20:02 UTC
Number of recursive dependencies: 72

Run revdepcheck::revdep_details(, "tsdistributions") for more info

checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘estimation_demo.Rmd’ using rmarkdown --- finished re-building ‘estimation_demo.Rmd’

--- re-building ‘location_scale_distributions.Rmd’ using rmarkdown ! Undefined control sequence. l.56 \NewDocumentCommand \citeproctext{}{}

... --- finished re-building ‘profile_demo.Rmd’

--- re-building ‘spd_demo.Rmd’ using rmarkdown --- finished re-building ‘spd_demo.Rmd’

SUMMARY: processing the following file failed: ‘location_scale_distributions.Rmd’

Error: Vignette re-building failed. Execution halted ```
checking installed package size ... NOTE installed size is 42.9Mb sub-directories of 1Mb or more: libs 42.2Mb

tsgarch

Version: 1.0.3
GitHub: https://github.com/tsmodels/tsgarch
Source code: https://github.com/cran/tsgarch
Date/Publication: 2024-10-12 00:50:02 UTC
Number of recursive dependencies: 94

Run revdepcheck::revdep_details(, "tsgarch") for more info

checking installed package size ... NOTE installed size is 144.4Mb sub-directories of 1Mb or more: libs 143.3Mb

tsmarch

Version: 1.0.0
GitHub: https://github.com/tsmodels/tsmarch
Source code: https://github.com/cran/tsmarch
Date/Publication: 2024-11-18 13:30:02 UTC
Number of recursive dependencies: 150

Run revdepcheck::revdep_details(, "tsmarch") for more info

checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘feasible_multivariate_garch.Rmd’ using rmarkdown ! Undefined control sequence. l.97 \NewDocumentCommand \citeproctext{}{}

Error: processing vignette 'feasible_multivariate_garch.Rmd' failed with diagnostics: LaTeX failed to compile /c4/home/henrik/futureverse/future/revdep/checks/tsmarch/new/tsmarch.Rcheck/vign_test/tsmarch/vignettes/feasible_multivariate_garch.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See feasible_multivariate_garch.log for more info. --- failed re-building ‘feasible_multivariate_garch.Rmd’

--- re-building ‘tsmarch_demo.Rmd’ using rmarkdown --- finished re-building ‘tsmarch_demo.Rmd’

SUMMARY: processing the following file failed: ‘feasible_multivariate_garch.Rmd’

Error: Vignette re-building failed. Execution halted ```
checking installed package size ... NOTE installed size is 21.8Mb sub-directories of 1Mb or more: doc 1.6Mb libs 18.8Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

txshift

Version: 0.3.8
GitHub: https://github.com/nhejazi/txshift
Source code: https://github.com/cran/txshift
Date/Publication: 2022-02-09 22:30:02 UTC
Number of recursive dependencies: 111

Run revdepcheck::revdep_details(, "txshift") for more info

checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘sl3’
checking Rd files ... NOTE checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup? 55 | {A - delta}, {A + delta}, and {A + 2 * delta}). | ^ checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup? 55 | {A - delta}, {A + delta}, and {A + 2 * delta}). | ^ checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup? 55 | {A - delta}, {A + delta}, and {A + 2 * delta}). | ^

UCSCXenaShiny

Version: 2.1.0
GitHub: https://github.com/openbiox/UCSCXenaShiny
Source code: https://github.com/cran/UCSCXenaShiny
Date/Publication: 2024-05-15 14:10:06 UTC
Number of recursive dependencies: 210

Run revdepcheck::revdep_details(, "UCSCXenaShiny") for more info

checking installed package size ... NOTE installed size is 8.0Mb sub-directories of 1Mb or more: data 1.1Mb doc 1.4Mb shinyapp 4.9Mb

updog

Version: 2.1.5
GitHub: https://github.com/dcgerard/updog
Source code: https://github.com/cran/updog
Date/Publication: 2023-11-29 15:50:02 UTC
Number of recursive dependencies: 137

Run revdepcheck::revdep_details(, "updog") for more info

checking installed package size ... NOTE installed size is 8.9Mb sub-directories of 1Mb or more: libs 8.1Mb

vital

Version: 1.1.0
GitHub: https://github.com/robjhyndman/vital
Source code: https://github.com/cran/vital
Date/Publication: 2024-06-21 08:00:02 UTC
Number of recursive dependencies: 200

Run revdepcheck::revdep_details(, "vital") for more info

checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: data 4.4Mb help 1.3Mb

vmeasur

Version: 0.1.4
GitHub: NA
Source code: https://github.com/cran/vmeasur
Date/Publication: 2021-11-11 19:00:02 UTC
Number of recursive dependencies: 110

Run revdepcheck::revdep_details(, "vmeasur") for more info

checking whether package ‘vmeasur’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/futureverse/future/revdep/checks/vmeasur/new/vmeasur.Rcheck/00install.out’ for details.

WeightedCluster

Version: 1.8-1
GitHub: NA
Source code: https://github.com/cran/WeightedCluster
Date/Publication: 2024-12-10 22:00:02 UTC
Number of recursive dependencies: 72

Run revdepcheck::revdep_details(, "WeightedCluster") for more info

checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘BigDataSA.Rmd’ using rmarkdown --- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown --- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown --- finished re-building ‘ClusterValidSA.Rmd’

... l.85 \usepackage {tikz}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following files failed: ‘WeightedClusterFR.Rnw’ ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed. Execution halted ```

winputall

Version: 1.0.1
GitHub: NA
Source code: https://github.com/cran/winputall
Date/Publication: 2024-06-07 14:40:02 UTC
Number of recursive dependencies: 102

Run revdepcheck::revdep_details(, "winputall") for more info

checking installed package size ... NOTE installed size is 103.2Mb sub-directories of 1Mb or more: libs 102.8Mb
checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

wru

Version: 3.0.3
GitHub: https://github.com/kosukeimai/wru
Source code: https://github.com/cran/wru
Date/Publication: 2024-05-24 18:00:02 UTC
Number of recursive dependencies: 95

Run revdepcheck::revdep_details(, "wru") for more info

checking installed package size ... NOTE installed size is 7.5Mb sub-directories of 1Mb or more: data 3.5Mb help 1.9Mb libs 1.9Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘tidyr’ All declared Imports should be used.

XNAString

Version: 1.14.0
GitHub: NA
Source code: https://github.com/cran/XNAString
Date/Publication: 2024-10-29
Number of recursive dependencies: 107

Run revdepcheck::revdep_details(, "XNAString") for more info

checking compiled code ... WARNING ``` File ‘XNAString/libs/XNAString.so’: Found ‘rand’, possibly from ‘rand’ (C) Object: ‘./ViennaRNA/utils/utils.o’ Found ‘sprintf’, possibly from ‘sprintf’ (C) Objects: ‘./ViennaRNA/part_func_up.o’, ‘./ViennaRNA/RNAstruct.o’, ‘./ViennaRNA/model.o’ Found ‘srand’, possibly from ‘srand’ (C) Object: ‘./ViennaRNA/utils/utils.o’

Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. ```
checking C++ specification ... NOTE Specified C++11: please drop specification unless essential
checking installed package size ... NOTE installed size is 11.3Mb sub-directories of 1Mb or more: doc 1.0Mb libs 9.5Mb
checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file.

HenrikBengtsson/future documentation built on June 8, 2025, 10:58 p.m.

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HenrikBengtsson/future Unified Parallel and Distributed Processing in R for Everyone

revdep/R_FUTURE_CONNECTIONS_ONMISUSE=error/problems.md In HenrikBengtsson/future: Unified Parallel and Distributed Processing in R for Everyone

aifeducation

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AIPW

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apsimx

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aroma.affymetrix

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ARPALData

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bamm

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batchtools

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Please configure as appropriate and try again.

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ChromSCape

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Name: get_pathway_mat_scExp

Title: Get pathway matrix

Aliases: get_pathway_mat_scExp

** Examples

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dispositionEffect

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distantia

HenrikBengtsson/future
Unified Parallel and Distributed Processing in R for Everyone

revdep/R_FUTURE_CONNECTIONS_ONMISUSE=error/problems.md
In HenrikBengtsson/future: Unified Parallel and Distributed Processing in R for Everyone