revdep/R_FUTURE_RESOLVED_TIMEOUT=0/problems.md

In HenrikBengtsson/future: Unified Parallel and Distributed Processing in R for Everyone

AlpsNMR

• Version: 3.0.5
• GitHub: NA
• Source code: https://github.com/cran/AlpsNMR
• Date/Publication: 2021-01-20
• Number of recursive dependencies: 163

Run revdep_details(, "AlpsNMR") for more info

In both

• checking Rd \usage sections ... WARNING ``` Undocumented arguments in documentation object 'MUVR_model_plot' ‘MVObj’ ‘model’ ‘factCols’ ‘sampLabels’ ‘ylim’

  Undocumented arguments in documentation object 'confusion_matrix' ‘MVObj’ ‘model’

  Undocumented arguments in documentation object 'model_VIP' ‘model’

  Undocumented arguments in documentation object 'rdCV_PLS_RF' ...

  Undocumented arguments in documentation object 'rdCV_PLS_RF_ML' ‘scale’ ‘nRep’ ‘nOuter’ ‘nInner’ ‘varRatio’ ‘DA’ ‘fitness’ ‘method’ ‘ML’ ‘modReturn’ ‘logg’ ‘parallel’

  Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. ```

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘zip’ All declared Imports should be used.

aroma.core

• Version: 3.2.2
• GitHub: https://github.com/HenrikBengtsson/aroma.core
• Source code: https://github.com/cran/aroma.core
• Date/Publication: 2021-01-05 05:10:12 UTC
• Number of recursive dependencies: 47

Run revdep_details(, "aroma.core") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

BAMBI

• Version: 2.3.0
• GitHub: https://github.com/c7rishi/BAMBI
• Source code: https://github.com/cran/BAMBI
• Date/Publication: 2020-06-19 13:50:07 UTC
• Number of recursive dependencies: 49

Run revdep_details(, "BAMBI") for more info

In both

• checking installed package size ... NOTE installed size is 5.6Mb sub-directories of 1Mb or more: libs 5.1Mb

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘stats4’ All declared Imports should be used.

batchtools

• Version: 0.9.15
• GitHub: https://github.com/mllg/batchtools
• Source code: https://github.com/cran/batchtools
• Date/Publication: 2021-01-11 12:40:03 UTC
• Number of recursive dependencies: 80

Run revdep_details(, "batchtools") for more info

In both

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘Rmpi’

bcmaps

• Version: 1.0.2
• GitHub: https://github.com/bcgov/bcmaps
• Source code: https://github.com/cran/bcmaps
• Date/Publication: 2021-03-09 23:40:03 UTC
• Number of recursive dependencies: 119

Run revdep_details(, "bcmaps") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'lwgeom', 'stars'

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘stars’

biotmle

• Version: 1.14.0
• GitHub: https://github.com/nhejazi/biotmle
• Source code: https://github.com/cran/biotmle
• Date/Publication: 2020-10-27
• Number of recursive dependencies: 163

Run revdep_details(, "biotmle") for more info

In both

• checking tests ... ``` ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biotmle) biotmle v1.14.0: Targeted Learning with Moderated Statistics for Biomarker Discovery > > test_check("biotmle") ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure (test-biomarkertmle.R:33:3): biomarkertmle output is consistent using example data ── assay(biomarkerTMLEout)[1, c(17, 83, 117)] not equal to c(360.7073, 375.9316, 319.3649). names for target but not for current

  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 12 ] Error: Test failures Execution halted ```

blavaan

• Version: 0.3-15
• GitHub: NA
• Source code: https://github.com/cran/blavaan
• Date/Publication: 2021-02-19 19:50:02 UTC
• Number of recursive dependencies: 114

Run revdep_details(, "blavaan") for more info

In both

• checking installed package size ... NOTE installed size is 64.6Mb sub-directories of 1Mb or more: libs 63.1Mb

• checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

blockCV

• Version: 2.1.1
• GitHub: https://github.com/rvalavi/blockCV
• Source code: https://github.com/cran/blockCV
• Date/Publication: 2020-02-23 20:00:02 UTC
• Number of recursive dependencies: 116

Run revdep_details(, "blockCV") for more info

In both

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘biomod2’

brms

• Version: 2.15.0
• GitHub: https://github.com/paul-buerkner/brms
• Source code: https://github.com/cran/brms
• Date/Publication: 2021-03-14 15:50:31 UTC
• Number of recursive dependencies: 215

Run revdep_details(, "brms") for more info

In both

• checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’

• checking installed package size ... NOTE installed size is 6.3Mb sub-directories of 1Mb or more: R 3.1Mb doc 2.4Mb

CLVTools

• Version: 0.7.0
• GitHub: https://github.com/bachmannpatrick/CLVTools
• Source code: https://github.com/cran/CLVTools
• Date/Publication: 2020-08-26 20:10:02 UTC
• Number of recursive dependencies: 82

Run revdep_details(, "CLVTools") for more info

In both

• checking installed package size ... NOTE installed size is 12.0Mb sub-directories of 1Mb or more: libs 10.8Mb

codebook

• Version: 0.9.2
• GitHub: https://github.com/rubenarslan/codebook
• Source code: https://github.com/cran/codebook
• Date/Publication: 2020-06-06 23:40:03 UTC
• Number of recursive dependencies: 207

Run revdep_details(, "codebook") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘graphics’ ‘jsonlite’ ‘rlang’ ‘tidyselect’ ‘vctrs’ All declared Imports should be used.

• checking data for non-ASCII characters ... NOTE Note: found 65 marked UTF-8 strings

cSEM

• Version: 0.3.1
• GitHub: https://github.com/M-E-Rademaker/cSEM
• Source code: https://github.com/cran/cSEM
• Date/Publication: 2021-02-14 22:50:20 UTC
• Number of recursive dependencies: 123

Run revdep_details(, "cSEM") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Rdpack’ All declared Imports should be used.

datapackage.r

• Version: 1.3.2
• GitHub: https://github.com/frictionlessdata/datapackage-r
• Source code: https://github.com/cran/datapackage.r
• Date/Publication: 2021-01-14 22:10:11 UTC
• Number of recursive dependencies: 119

Run revdep_details(, "datapackage.r") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘iterators’ ‘readr’ All declared Imports should be used.

delayed

• Version: 0.3.0
• GitHub: https://github.com/tlverse/delayed
• Source code: https://github.com/cran/delayed
• Date/Publication: 2020-02-28 11:40:02 UTC
• Number of recursive dependencies: 80

Run revdep_details(, "delayed") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘assertthat’ All declared Imports should be used.

dragon

• Version: 1.1.0
• GitHub: https://github.com/sjspielman/dragon
• Source code: https://github.com/cran/dragon
• Date/Publication: 2020-12-08 08:10:15 UTC
• Number of recursive dependencies: 135

Run revdep_details(, "dragon") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘htmltools’ All declared Imports should be used.

drimmR

• Version: 1.0.0
• GitHub: NA
• Source code: https://github.com/cran/drimmR
• Date/Publication: 2021-03-22 10:00:03 UTC
• Number of recursive dependencies: 119

Run revdep_details(, "drimmR") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘Biostrings’ ‘stats’ ‘testthat’ All declared Imports should be used.

easyalluvial

• Version: 0.3.0
• GitHub: https://github.com/erblast/easyalluvial
• Source code: https://github.com/cran/easyalluvial
• Date/Publication: 2021-01-13 10:40:09 UTC
• Number of recursive dependencies: 178

Run revdep_details(, "easyalluvial") for more info

In both

• checking package dependencies ... NOTE Package suggested but not available for checking: ‘parcats’

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

EFAtools

• Version: 0.3.0
• GitHub: https://github.com/mdsteiner/EFAtools
• Source code: https://github.com/cran/EFAtools
• Date/Publication: 2020-11-04 18:00:02 UTC
• Number of recursive dependencies: 88

Run revdep_details(, "EFAtools") for more info

In both

• checking installed package size ... NOTE installed size is 7.1Mb sub-directories of 1Mb or more: doc 1.0Mb libs 5.3Mb

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

envi

• Version: 0.1.8
• GitHub: https://github.com/Waller-SUSAN/envi
• Source code: https://github.com/cran/envi
• Date/Publication: 2021-03-15 11:30:09 UTC
• Number of recursive dependencies: 115

Run revdep_details(, "envi") for more info

In both

• checking whether package ‘envi’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/future/revdep/checks/envi/new/envi.Rcheck/00install.out’ for details.

EpiNow2

• Version: 1.3.2
• GitHub: https://github.com/epiforecasts/EpiNow2
• Source code: https://github.com/cran/EpiNow2
• Date/Publication: 2020-12-14 09:00:15 UTC
• Number of recursive dependencies: 153

Run revdep_details(, "EpiNow2") for more info

In both

• checking package dependencies ... NOTE Package suggested but not available for checking: ‘EpiSoon’

• checking installed package size ... NOTE installed size is 155.0Mb sub-directories of 1Mb or more: libs 153.4Mb

foieGras

• Version: 0.6-9
• GitHub: https://github.com/ianjonsen/foieGras
• Source code: https://github.com/cran/foieGras
• Date/Publication: 2020-07-22 21:50:02 UTC
• Number of recursive dependencies: 126

Run revdep_details(, "foieGras") for more info

In both

• checking installed package size ... NOTE installed size is 37.4Mb sub-directories of 1Mb or more: libs 36.3Mb

forecastML

• Version: 0.9.0
• GitHub: https://github.com/nredell/forecastML
• Source code: https://github.com/cran/forecastML
• Date/Publication: 2020-05-07 15:10:17 UTC
• Number of recursive dependencies: 98

Run revdep_details(, "forecastML") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘dtplyr’ All declared Imports should be used.

fxTWAPLS

• Version: 0.0.5
• GitHub: https://github.com/special-uor/fxTWAPLS
• Source code: https://github.com/cran/fxTWAPLS
• Date/Publication: 2021-01-29 12:10:02 UTC
• Number of recursive dependencies: 63

Run revdep_details(, "fxTWAPLS") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘progress’ All declared Imports should be used.

GetBCBData

• Version: 0.6
• GitHub: https://github.com/msperlin/GetBCBData
• Source code: https://github.com/cran/GetBCBData
• Date/Publication: 2021-01-21 17:40:07 UTC
• Number of recursive dependencies: 84

Run revdep_details(, "GetBCBData") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘RCurl’ ‘lubridate’ ‘readr’ ‘stats’ All declared Imports should be used.

googleTagManageR

• Version: 0.1.6
• GitHub: NA
• Source code: https://github.com/cran/googleTagManageR
• Date/Publication: 2020-10-05 13:20:10 UTC
• Number of recursive dependencies: 69

Run revdep_details(, "googleTagManageR") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘assertthat’ ‘future’ ‘httr’ ‘jsonlite’ All declared Imports should be used.

grattan

• Version: 1.9.0.4
• GitHub: https://github.com/HughParsonage/grattan
• Source code: https://github.com/cran/grattan
• Date/Publication: 2021-01-29 09:40:05 UTC
• Number of recursive dependencies: 115

Run revdep_details(, "grattan") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'taxstats', 'taxstats1516'

• checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 1.8Mb libs 3.0Mb

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘hutilscpp’ All declared Imports should be used.

gstat

• Version: 2.0-7
• GitHub: https://github.com/r-spatial/gstat
• Source code: https://github.com/cran/gstat
• Date/Publication: 2021-03-19 08:50:06 UTC
• Number of recursive dependencies: 39

Run revdep_details(, "gstat") for more info

In both

• checking tests ... ERROR Running the tests in ‘tests/stars.R’ failed. Last 50 lines of output: [using ordinary kriging] > > # 1. using sf: > suppressPackageStartupMessages(library(sf)) > demo(meuse_sf, ask = FALSE, echo = FALSE) > # reloads meuse as data.frame, so > demo(meuse, ask = FALSE) ... > v = variogram(log(zinc)~1, meuse_sf) > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) model psill range 1 Nug 0.05066243 0.0000 2 Sph 0.59060780 897.0209 > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) Error in .local(formula, locations, ...) : stars required: install that first Calls: krige -> krige -> .local Execution halted

• checking package dependencies ... NOTE Package suggested but not available for checking: ‘stars’

gtfs2gps

• Version: 1.3-2
• GitHub: https://github.com/ipeaGIT/gtfs2gps
• Source code: https://github.com/cran/gtfs2gps
• Date/Publication: 2020-11-05 17:30:12 UTC
• Number of recursive dependencies: 78

Run revdep_details(, "gtfs2gps") for more info

In both

• checking package dependencies ... ERROR ``` Package required but not available: ‘lwgeom’

  See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

hal9001

• Version: 0.2.7
• GitHub: https://github.com/tlverse/hal9001
• Source code: https://github.com/cran/hal9001
• Date/Publication: 2021-01-22 05:40:12 UTC
• Number of recursive dependencies: 93

Run revdep_details(, "hal9001") for more info

In both

• checking installed package size ... NOTE installed size is 5.5Mb sub-directories of 1Mb or more: libs 5.3Mb

IFAA

• Version: 1.0.1
• GitHub: https://github.com/gitlzg/IFAA
• Source code: https://github.com/cran/IFAA
• Date/Publication: 2021-01-06 17:10:02 UTC
• Number of recursive dependencies: 42

Run revdep_details(, "IFAA") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘expm’ ‘rlecuyer’ All declared Imports should be used.

iml

• Version: 0.10.1
• GitHub: https://github.com/christophM/iml
• Source code: https://github.com/cran/iml
• Date/Publication: 2020-09-24 12:30:14 UTC
• Number of recursive dependencies: 161

Run revdep_details(, "iml") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘keras’ All declared Imports should be used.

infercnv

• Version: 1.6.0
• GitHub: https://github.com/broadinstitute/inferCNV
• Source code: https://github.com/cran/infercnv
• Date/Publication: 2020-10-27
• Number of recursive dependencies: 126

Run revdep_details(, "infercnv") for more info

In both

• checking installed package size ... NOTE installed size is 5.0Mb sub-directories of 1Mb or more: extdata 3.1Mb

• checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘HiddenMarkov:::makedensity’ See the note in ?`:::` about the use of this operator.

inlinedocs

• Version: 2019.12.5
• GitHub: https://github.com/tdhock/inlinedocs
• Source code: https://github.com/cran/inlinedocs
• Date/Publication: 2019-12-05 23:30:07 UTC
• Number of recursive dependencies: 7

Run revdep_details(, "inlinedocs") for more info

In both

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘R.methodsS3’

ItemResponseTrees

• Version: 0.2.5
• GitHub: https://github.com/hplieninger/ItemResponseTrees
• Source code: https://github.com/cran/ItemResponseTrees
• Date/Publication: 2020-05-06 22:00:15 UTC
• Number of recursive dependencies: 123

Run revdep_details(, "ItemResponseTrees") for more info

In both

• checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'fit.irtree_model.Rd': ‘[MplusAutomation:MplusAutomation-package]{MplusAutomation}’

  See section 'Cross-references' in the 'Writing R Extensions' manual. ```

keyATM

• Version: 0.4.0
• GitHub: https://github.com/keyATM/keyATM
• Source code: https://github.com/cran/keyATM
• Date/Publication: 2021-02-14 17:40:02 UTC
• Number of recursive dependencies: 115

Run revdep_details(, "keyATM") for more info

In both

• checking installed package size ... NOTE installed size is 18.0Mb sub-directories of 1Mb or more: libs 17.7Mb

lidR

• Version: 3.1.2
• GitHub: https://github.com/Jean-Romain/lidR
• Source code: https://github.com/cran/lidR
• Date/Publication: 2021-03-16 13:40:12 UTC
• Number of recursive dependencies: 159

Run revdep_details(, "lidR") for more info

In both

• checking installed package size ... NOTE installed size is 13.5Mb sub-directories of 1Mb or more: extdata 1.1Mb libs 9.9Mb

lmtp

• Version: 0.9.0
• GitHub: NA
• Source code: https://github.com/cran/lmtp
• Date/Publication: 2021-02-22 15:50:02 UTC
• Number of recursive dependencies: 92

Run revdep_details(, "lmtp") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘nnls’ ‘utils’ All declared Imports should be used.

meedr

• Version: 0.0.1
• GitHub: https://github.com/schoulten/meedr
• Source code: https://github.com/cran/meedr
• Date/Publication: 2021-03-18 09:00:02 UTC
• Number of recursive dependencies: 66

Run revdep_details(, "meedr") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘lubridate’ All declared Imports should be used.

methyvim

• Version: 1.11.0
• GitHub: https://github.com/nhejazi/methyvim
• Source code: https://github.com/cran/methyvim
• Date/Publication: 2020-04-27
• Number of recursive dependencies: 213

Run revdep_details(, "methyvim") for more info

In both

• checking tests ... ``` ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(methyvim) Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) methyvim v1.11.0: Targeted, Robust, and Model-free Differential Methylation Analysis > > set.seed(43719) ... █

  1. ├─base::suppressWarnings(...) test-methyvim.R:22:0
  2. │ └─base::withCallingHandlers(...)
  3. └─methyvim::methyvim(...)
  4. ├─base::colnames<-(...)
  5. └─base::colnames<-(...)

  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 34 ] Error: Test failures Execution halted ```

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘tmle.npvi’

MineICA

• Version: 1.30.0
• GitHub: NA
• Source code: https://github.com/cran/MineICA
• Date/Publication: 2020-10-27
• Number of recursive dependencies: 199

Run revdep_details(, "MineICA") for more info

In both

• checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'Alist.Rd': ‘class-IcaSet’

  Missing link or links in documentation object 'Slist.Rd': ‘class-IcaSet’

  Missing link or links in documentation object 'class-IcaSet.Rd': ‘class-IcaSet’

  Missing link or links in documentation object 'getComp.Rd': ‘class-IcaSet’

  Missing link or links in documentation object 'runAn.Rd': ‘[Category:class-GOHyperGParams]{GOHyperGParams}’

  See section 'Cross-references' in the 'Writing R Extensions' manual. ```

• checking for missing documentation entries ... WARNING Undocumented S4 classes: ‘MineICAParams’ All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.

• checking package dependencies ... NOTE ``` Package which this enhances but not available for checking: ‘doMC’

  Depends: includes the non-default packages: 'BiocGenerics', 'Biobase', 'plyr', 'ggplot2', 'scales', 'foreach', 'xtable', 'biomaRt', 'gtools', 'GOstats', 'cluster', 'marray', 'mclust', 'RColorBrewer', 'colorspace', 'igraph', 'Rgraphviz', 'graph', 'annotate', 'Hmisc', 'fastICA', 'JADE' Adding so many packages to the search path is excessive and importing selectively is preferable. ```

• checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘biomaRt’ ‘GOstats’ ‘cluster’ ‘mclust’ ‘igraph’ A package should be listed in only one of these fields.

• checking dependencies in R code ... NOTE 'library' or 'require' call to ‘GOstats’ which was already attached by Depends. Please remove these calls from your code. Namespace in Imports field not imported from: ‘lumiHumanAll.db’ All declared Imports should be used. Packages in Depends field not imported from: ‘GOstats’ ‘Hmisc’ ‘JADE’ ‘RColorBrewer’ ‘Rgraphviz’ ‘annotate’ ‘biomaRt’ ‘cluster’ ‘colorspace’ ‘fastICA’ ‘foreach’ ‘ggplot2’ ‘graph’ ‘gtools’ ‘igraph’ ‘marray’ ‘mclust’ ‘methods’ ‘plyr’ ‘scales’ ‘xtable’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. ':::' calls which should be '::': ‘Biobase:::annotation<-’ ‘Biobase:::validMsg’ ‘fpc:::pamk’ ‘lumi:::getChipInfo’ ‘mclust:::adjustedRandIndex’ See the note in ?`:::` about the use of this operator. Unexported object imported by a ':::' call: ‘Biobase:::isValidVersion’ See the note in ?`:::` about the use of this operator.

• checking R code for possible problems ... NOTE addGenesToGoReport: no visible global function definition for ‘geneIdsByCategory’ addGenesToGoReport: no visible global function definition for ‘geneIdUniverse’ addGenesToGoReport: no visible global function definition for ‘conditional’ addGenesToGoReport: no visible global function definition for ‘sigCategories’ annot2Color: no visible global function definition for ‘brewer.pal’ annot2Color: no visible global function definition for ‘heat_hcl’ ... importFrom("methods", "callNextMethod", "new", "validObject") importFrom("stats", "aggregate", "as.dendrogram", "as.dist", "as.hclust", "chisq.test", "cor", "cor.test", "cutree", "dist", "hclust", "kmeans", "kruskal.test", "lm", "median", "na.omit", "order.dendrogram", "p.adjust", "quantile", "reorder", "shapiro.test", "wilcox.test") importFrom("utils", "capture.output", "combn", "read.table", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').

mlr3db

• Version: 0.4.0
• GitHub: https://github.com/mlr-org/mlr3db
• Source code: https://github.com/cran/mlr3db
• Date/Publication: 2021-03-09 12:10:02 UTC
• Number of recursive dependencies: 70

Run revdep_details(, "mlr3db") for more info

In both

• checking tests ... ``` ERROR Running the tests in ‘tests/testthat.R’ failed. Last 50 lines of output: 5. └─mlr3:::.Learnertrain(...) 6. └─mlr3:::learner_train(self, task, row_ids) 7. └─mlr3misc::encapsulate(...) 8. ├─mlr3misc::invoke(...) 9. │ └─base::eval.parent(expr, n = 1L)

  1. │ └─base::eval(expr, p)
  2. │ └─base::eval(expr, p) ...
     1. ├─future::value(fs)
     2. └─future:::value.list(fs)
     3. ├─future::resolve(...)
     4. └─future:::resolve.list(...)
  3. └─future:::signalConditionsASAP(obj, resignal = FALSE, pos = ii)
  4. └─future:::signalConditions(...)

  [ FAIL 9 | WARN 1 | SKIP 0 | PASS 667 ] Error: Test failures Execution halted ```

origami

• Version: 1.0.3
• GitHub: https://github.com/tlverse/origami
• Source code: https://github.com/cran/origami
• Date/Publication: 2020-01-16 22:40:02 UTC
• Number of recursive dependencies: 86

Run revdep_details(, "origami") for more info

In both

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘glmnet’

partR2

• Version: 0.9.1
• GitHub: https://github.com/mastoffel/partR2
• Source code: https://github.com/cran/partR2
• Date/Publication: 2021-01-18 16:30:04 UTC
• Number of recursive dependencies: 90

Run revdep_details(, "partR2") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used.

pavo

• Version: 2.6.1
• GitHub: https://github.com/rmaia/pavo
• Source code: https://github.com/cran/pavo
• Date/Publication: 2020-12-18 22:20:02 UTC
• Number of recursive dependencies: 106

Run revdep_details(, "pavo") for more info

In both

• checking whether package ‘pavo’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/future/revdep/checks/pavo/new/pavo.Rcheck/00install.out’ for details.

phylolm

• Version: 2.6.2
• GitHub: https://github.com/lamho86/phylolm
• Source code: https://github.com/cran/phylolm
• Date/Publication: 2020-06-22 05:10:08 UTC
• Number of recursive dependencies: 44

Run revdep_details(, "phylolm") for more info

In both

• checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘geiger’, ‘caper’

PLNmodels

• Version: 0.11.4
• GitHub: https://github.com/pln-team/PLNmodels
• Source code: https://github.com/cran/PLNmodels
• Date/Publication: 2021-03-16 16:10:02 UTC
• Number of recursive dependencies: 184

Run revdep_details(, "PLNmodels") for more info

In both

• checking installed package size ... NOTE installed size is 12.7Mb sub-directories of 1Mb or more: doc 2.1Mb libs 9.6Mb

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘DESeq2’

Prostar

• Version: 1.22.6
• GitHub: https://github.com/samWieczorek/Prostar
• Source code: https://github.com/cran/Prostar
• Date/Publication: 2021-01-26
• Number of recursive dependencies: 298

Run revdep_details(, "Prostar") for more info

In both

• checking whether package ‘Prostar’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/future/revdep/checks/Prostar/new/Prostar.Rcheck/00install.out’ for details.

QDNAseq

• Version: 1.26.0
• GitHub: https://github.com/ccagc/QDNAseq
• Source code: https://github.com/cran/QDNAseq
• Date/Publication: 2020-10-27
• Number of recursive dependencies: 72

Run revdep_details(, "QDNAseq") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

regmedint

• Version: 0.2.0
• GitHub: https://github.com/kaz-yos/regmedint
• Source code: https://github.com/cran/regmedint
• Date/Publication: 2020-11-16 12:30:07 UTC
• Number of recursive dependencies: 110

Run revdep_details(, "regmedint") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Deriv’ All declared Imports should be used.

rgee

• Version: 1.0.8
• GitHub: https://github.com/r-spatial/rgee
• Source code: https://github.com/cran/rgee
• Date/Publication: 2021-01-27 08:50:03 UTC
• Number of recursive dependencies: 138

Run revdep_details(, "rgee") for more info

In both

• checking tests ... ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(raster) Loading required package: sp > library(stars) Error in library(stars) : there is no package called 'stars' Execution halted

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'geojsonio', 'stars'

robotstxt

• Version: 0.7.13
• GitHub: https://github.com/ropensci/robotstxt
• Source code: https://github.com/cran/robotstxt
• Date/Publication: 2020-09-03 19:30:02 UTC
• Number of recursive dependencies: 66

Run revdep_details(, "robotstxt") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘future’ All declared Imports should be used.

sapfluxnetr

• Version: 0.1.1
• GitHub: https://github.com/sapfluxnet/sapfluxnetr
• Source code: https://github.com/cran/sapfluxnetr
• Date/Publication: 2020-08-27 12:50:02 UTC
• Number of recursive dependencies: 77

Run revdep_details(, "sapfluxnetr") for more info

In both

• checking data for non-ASCII characters ... NOTE Note: found 4 marked UTF-8 strings

sctransform

• Version: 0.3.2
• GitHub: https://github.com/ChristophH/sctransform
• Source code: https://github.com/cran/sctransform
• Date/Publication: 2020-12-16 14:40:03 UTC
• Number of recursive dependencies: 70

Run revdep_details(, "sctransform") for more info

In both

• checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘glmGamPoi’

sdmApp

• Version: 0.0.1
• GitHub: https://github.com/Abson-dev/sdmApp
• Source code: https://github.com/cran/sdmApp
• Date/Publication: 2021-01-22 10:40:03 UTC
• Number of recursive dependencies: 231

Run revdep_details(, "sdmApp") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘CENFA’ ‘DT’ ‘SSDM’ ‘biomod2’ ‘blockCV’ ‘data.table’ ‘dismo’ ‘ggcorrplot’ ‘haven’ ‘kernlab’ ‘rJava’ ‘randomForest’ ‘readxl’ ‘rgeos’ ‘rhandsontable’ ‘shinyBS’ ‘shinyFiles’ ‘sp’ ‘tidyverse’ All declared Imports should be used.

seer

• Version: 1.1.5
• GitHub: NA
• Source code: https://github.com/cran/seer
• Date/Publication: 2020-06-08 05:00:02 UTC
• Number of recursive dependencies: 112

Run revdep_details(, "seer") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MASS’ All declared Imports should be used.

Seurat

• Version: 4.0.1
• GitHub: https://github.com/satijalab/seurat
• Source code: https://github.com/cran/Seurat
• Date/Publication: 2021-03-18 06:30:19 UTC
• Number of recursive dependencies: 239

Run revdep_details(, "Seurat") for more info

In both

• checking installed package size ... NOTE installed size is 11.4Mb sub-directories of 1Mb or more: R 1.2Mb libs 9.5Mb

shiny

• Version: 1.6.0
• GitHub: https://github.com/rstudio/shiny
• Source code: https://github.com/cran/shiny
• Date/Publication: 2021-01-25 21:50:02 UTC
• Number of recursive dependencies: 107

Run revdep_details(, "shiny") for more info

In both

• checking installed package size ... NOTE installed size is 11.1Mb sub-directories of 1Mb or more: R 1.6Mb www 8.3Mb

shiny.worker

• Version: 0.0.1
• GitHub: NA
• Source code: https://github.com/cran/shiny.worker
• Date/Publication: 2021-01-21 11:00:02 UTC
• Number of recursive dependencies: 67

Run revdep_details(, "shiny.worker") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘shiny’ All declared Imports should be used.

shinyrecap

• Version: 0.1.0
• GitHub: NA
• Source code: https://github.com/cran/shinyrecap
• Date/Publication: 2019-01-19 23:40:03 UTC
• Number of recursive dependencies: 98

Run revdep_details(, "shinyrecap") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘CARE1’ ‘LCMCR’ ‘coda’ ‘conting’ ‘dga’ ‘future’ ‘ggplot2’ ‘ipc’ ‘promises’ ‘reshape’ ‘shinycssloaders’ ‘testthat’ All declared Imports should be used.

Signac

• Version: 1.1.1
• GitHub: https://github.com/timoast/signac
• Source code: https://github.com/cran/Signac
• Date/Publication: 2021-02-03 23:50:09 UTC
• Number of recursive dependencies: 241

Run revdep_details(, "Signac") for more info

In both

• R CMD check timed out

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'SeuratObject' All declared Imports should be used.

simhelpers

• Version: 0.1.1
• GitHub: https://github.com/meghapsimatrix/simhelpers
• Source code: https://github.com/cran/simhelpers
• Date/Publication: 2021-02-14 17:50:02 UTC
• Number of recursive dependencies: 103

Run revdep_details(, "simhelpers") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘magrittr’ ‘purrr’ ‘rlang’ ‘utils’ All declared Imports should be used.

skpr

• Version: 0.64.2
• GitHub: https://github.com/tylermorganwall/skpr
• Source code: https://github.com/cran/skpr
• Date/Publication: 2020-03-04 20:20:02 UTC
• Number of recursive dependencies: 149

Run revdep_details(, "skpr") for more info

In both

• checking installed package size ... NOTE installed size is 40.0Mb sub-directories of 1Mb or more: libs 38.5Mb

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘nlme’ All declared Imports should be used.

solitude

• Version: 1.1.1
• GitHub: https://github.com/talegari/solitude
• Source code: https://github.com/cran/solitude
• Date/Publication: 2020-09-17 10:10:07 UTC
• Number of recursive dependencies: 145

Run revdep_details(, "solitude") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘R6’ ‘lgr’ All declared Imports should be used.

spacey

• Version: 0.1.1
• GitHub: https://github.com/mikemahoney218/spacey
• Source code: https://github.com/cran/spacey
• Date/Publication: 2020-03-14 18:50:02 UTC
• Number of recursive dependencies: 103

Run revdep_details(, "spacey") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘rgdal’ All declared Imports should be used.

sparrpowR

• Version: 0.2.1
• GitHub: https://github.com/machiela-lab/sparrpowR
• Source code: https://github.com/cran/sparrpowR
• Date/Publication: 2021-03-16 09:50:02 UTC
• Number of recursive dependencies: 88

Run revdep_details(, "sparrpowR") for more info

In both

• checking whether package ‘sparrpowR’ can be installed ... WARNING Found the following significant warnings: Warning: no DISPLAY variable so Tk is not available See ‘/c4/home/henrik/repositories/future/revdep/checks/sparrpowR/new/sparrpowR.Rcheck/00install.out’ for details.

SPARSEMODr

• Version: 1.0.1
• GitHub: https://github.com/NAU-CCL/SPARSEMODr
• Source code: https://github.com/cran/SPARSEMODr
• Date/Publication: 2021-01-21 23:30:06 UTC
• Number of recursive dependencies: 107

Run revdep_details(, "SPARSEMODr") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘geosphere’ ‘lubridate’ ‘tidyverse’ ‘viridis’ All declared Imports should be used.

spatialwarnings

• Version: 2.0.0
• GitHub: https://github.com/spatial-ews/spatialwarnings
• Source code: https://github.com/cran/spatialwarnings
• Date/Publication: 2020-05-14 17:10:06 UTC
• Number of recursive dependencies: 81

Run revdep_details(, "spatialwarnings") for more info

In both

• checking installed package size ... NOTE installed size is 5.6Mb sub-directories of 1Mb or more: libs 4.6Mb

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘tidyr’ All declared Imports should be used.

spNetwork

• Version: 0.1.1
• GitHub: https://github.com/JeremyGelb/spNetwork
• Source code: https://github.com/cran/spNetwork
• Date/Publication: 2021-01-21 23:30:02 UTC
• Number of recursive dependencies: 120

Run revdep_details(, "spNetwork") for more info

In both

• checking installed package size ... NOTE installed size is 9.9Mb sub-directories of 1Mb or more: extdata 5.6Mb libs 3.3Mb

stars

• Version: 0.5-2
• GitHub: https://github.com/r-spatial/stars
• Source code: https://github.com/cran/stars
• Date/Publication: 2021-03-17 16:20:02 UTC
• Number of recursive dependencies: 144

Run revdep_details(, "stars") for more info

In both

• checking package dependencies ... ERROR ``` Package required but not available: ‘lwgeom’

  Package suggested but not available for checking: ‘starsdata’

  See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```

synergyfinder

• Version: 2.4.10
• GitHub: NA
• Source code: https://github.com/cran/synergyfinder
• Date/Publication: 2021-03-16
• Number of recursive dependencies: 155

Run revdep_details(, "synergyfinder") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘future’ ‘gstat’ ‘nleqslv’ ‘sp’ ‘tidyverse’ All declared Imports should be used.

• checking R code for possible problems ... NOTE .Extract2DrugPlotData: no visible binding for global variable ‘input_type’ .Extract2DrugPlotData: no visible binding for global variable ‘block_id’ .Extract2DrugPlotData: no visible binding for global variable ‘value’ .Extract2DrugPlotData: no visible binding for global variable ‘left’ .Extract2DrugPlotData: no visible binding for global variable ‘right’ .ExtractMultiDrugPlotData: no visible binding for global variable ‘block_id’ Bliss: no visible binding for global variable ‘Bliss_ref’ ... block_id color complete conc1 conc2 css data end grid id input_type label left metric n r respone response response_CI95 response_mean response_origin response_origin_CI95 response_origin_mean response_origin_sd response_origin_sem response_sd response_sem right start starts_with synergy text theta value x y Consider adding importFrom("graphics", "grid", "text") importFrom("stats", "end", "start") importFrom("utils", "data") to your NAMESPACE file.

tableschema.r

• Version: 1.1.1
• GitHub: https://github.com/frictionlessdata/tableschema-r
• Source code: https://github.com/cran/tableschema.r
• Date/Publication: 2020-03-12 12:40:02 UTC
• Number of recursive dependencies: 67

Run revdep_details(, "tableschema.r") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘iterators’ All declared Imports should be used.

• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘parsedate’

text

• Version: 0.9.10
• GitHub: https://github.com/OscarKjell/text
• Source code: https://github.com/cran/text
• Date/Publication: 2020-12-14 09:50:02 UTC
• Number of recursive dependencies: 139

Run revdep_details(, "text") for more info

In both

• checking data for non-ASCII characters ... NOTE Note: found 3 marked UTF-8 strings

TKCat

• Version: 0.5.4
• GitHub: https://github.com/patzaw/TKCat
• Source code: https://github.com/cran/TKCat
• Date/Publication: 2021-03-04 09:40:03 UTC
• Number of recursive dependencies: 98

Run revdep_details(, "TKCat") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘base64enc’ All declared Imports should be used.

treeHMM

• Version: 0.1.1
• GitHub: NA
• Source code: https://github.com/cran/treeHMM
• Date/Publication: 2019-12-12 17:10:02 UTC
• Number of recursive dependencies: 11

Run revdep_details(, "treeHMM") for more info

In both

• checking whether package ‘treeHMM’ can be installed ... WARNING Found the following significant warnings: Warning: Strategy 'multiprocess' is deprecated in future (>= 1.20.0). Instead, explicitly specify either 'multisession' or 'multicore'. In the current R session, 'multiprocess' equals 'multicore'. See ‘/c4/home/henrik/repositories/future/revdep/checks/treeHMM/new/treeHMM.Rcheck/00install.out’ for details.

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Matrix’ All declared Imports should be used.

TSstudio

• Version: 0.1.6
• GitHub: https://github.com/RamiKrispin/TSstudio
• Source code: https://github.com/cran/TSstudio
• Date/Publication: 2020-01-21 05:30:02 UTC
• Number of recursive dependencies: 144

Run revdep_details(, "TSstudio") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘forecastHybrid’ All declared Imports should be used.

txshift

• Version: 0.3.5
• GitHub: https://github.com/nhejazi/txshift
• Source code: https://github.com/cran/txshift
• Date/Publication: 2021-02-07 20:10:05 UTC
• Number of recursive dependencies: 97

Run revdep_details(, "txshift") for more info

In both

• checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘sl3’

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘tibble’ All declared Imports should be used.

HenrikBengtsson/future documentation built on April 1, 2024, 3:19 a.m.