revdep/problems.md

In HenrikBengtsson/listenv: Environments Behaving (Almost) as Lists

aroma.core

• Version: 3.3.0
• GitHub: https://github.com/HenrikBengtsson/aroma.core
• Source code: https://github.com/cran/aroma.core
• Date/Publication: 2022-11-15 18:30:13 UTC
• Number of recursive dependencies: 70

Run revdep_details(, "aroma.core") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

greed

• Version: 0.6.1
• GitHub: https://github.com/comeetie/greed
• Source code: https://github.com/cran/greed
• Date/Publication: 2022-10-03 22:00:05 UTC
• Number of recursive dependencies: 95

Run revdep_details(, "greed") for more info

In both

• checking installed package size ... NOTE installed size is 37.0Mb sub-directories of 1Mb or more: libs 34.8Mb

• checking data for non-ASCII characters ... NOTE Note: found 989 marked UTF-8 strings

signeR

• Version: 2.0.1
• GitHub: https://github.com/rvalieris/signeR
• Source code: https://github.com/cran/signeR
• Date/Publication: 2022-12-14
• Number of recursive dependencies: 242

Run revdep_details(, "signeR") for more info

In both

• checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: R 1.1Mb doc 4.7Mb

• checking R code for possible problems ... NOTE covariate: no visible binding for global variable ‘.’ denovo: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg19’ denovo: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg38’ explorepage: no visible binding for global variable ‘.’ fitting: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg19’ fitting: no visible binding for global variable ‘BSgenome.Hsapiens.UCSC.hg38’ ... ExposureCorrelation,SignExp-numeric: no visible binding for global variable ‘exposure’ ExposureCorrelation,matrix-numeric: no visible binding for global variable ‘Feature’ ExposureCorrelation,matrix-numeric: no visible binding for global variable ‘exposure’ Undefined global functions or variables: . BSgenome.Hsapiens.UCSC.hg19 BSgenome.Hsapiens.UCSC.hg38 Col Feature Frequency Row Samples Signatures alt<- exposure fc project sig sig_test

• checking Rd files ... NOTE prepare_Rd: cosmic_data.Rd:91-93: Dropping empty section \details prepare_Rd: cosmic_data.Rd:98-100: Dropping empty section \references prepare_Rd: cosmic_data.Rd:101-102: Dropping empty section \examples prepare_Rd: tcga_similarities.Rd:96-98: Dropping empty section \details prepare_Rd: tcga_similarities.Rd:99-101: Dropping empty section \source prepare_Rd: tcga_similarities.Rd:102-104: Dropping empty section \references prepare_Rd: tcga_similarities.Rd:105-106: Dropping empty section \examples prepare_Rd: tcga_tumors.Rd:18-20: Dropping empty section \details prepare_Rd: tcga_tumors.Rd:21-23: Dropping empty section \source prepare_Rd: tcga_tumors.Rd:24-26: Dropping empty section \references prepare_Rd: tcga_tumors.Rd:27-28: Dropping empty section \examples

HenrikBengtsson/listenv documentation built on Jan. 31, 2024, 9:08 a.m.