revdep/failures.md
In HenrikBengtsson/matrixStats: Functions that Apply to Rows and Columns of Matrices (and to Vectors)
BASiCS
- Version: 2.14.0
- GitHub: https://github.com/catavallejos/BASiCS
- Source code: https://github.com/cran/BASiCS
- Date/Publication: 2023-10-24
- Number of recursive dependencies: 194
Run revdep_details(, "BASiCS") for more info
In both
- checking whether package ‘BASiCS’ can be installed ... ERROR
Installation failed.
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/new/BASiCS.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘BASiCS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BASiCS.cpp -o BASiCS.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo.h:29,
from libraries.h:11,
...
installing to /c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/new/BASiCS.Rcheck/00LOCK-BASiCS/00new/BASiCS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error : in method for ‘Summary’ with signature ‘x="BASiCS_Chain"’: arguments (‘na.rm’) after ‘...’ in the generic must appear in the method, in the same place at the end of the argument list
Error: unable to load R code in package ‘BASiCS’
Execution halted
ERROR: lazy loading failed for package ‘BASiCS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/new/BASiCS.Rcheck/BASiCS’
CRAN
* installing *source* package ‘BASiCS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BASiCS.cpp -o BASiCS.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo.h:29,
from libraries.h:11,
...
installing to /c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/old/BASiCS.Rcheck/00LOCK-BASiCS/00new/BASiCS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error : in method for ‘Summary’ with signature ‘x="BASiCS_Chain"’: arguments (‘na.rm’) after ‘...’ in the generic must appear in the method, in the same place at the end of the argument list
Error: unable to load R code in package ‘BASiCS’
Execution halted
ERROR: lazy loading failed for package ‘BASiCS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/old/BASiCS.Rcheck/BASiCS’
brms
- Version: 2.21.0
- GitHub: https://github.com/paul-buerkner/brms
- Source code: https://github.com/cran/brms
- Date/Publication: 2024-03-20 12:30:08 UTC
- Number of recursive dependencies: 201
Run revdep_details(, "brms") for more info
In both
-
R CMD check timed out
-
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘cmdstanr’
-
checking installed package size ... NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
R 3.7Mb
doc 3.5Mb
cliqueMS
- Version: 1.16.0
- GitHub: https://github.com/osenan/cliqueMS
- Source code: https://github.com/cran/cliqueMS
- Date/Publication: 2023-10-24
- Number of recursive dependencies: 172
Run revdep_details(, "cliqueMS") for more info
In both
- checking whether package ‘cliqueMS’ can be installed ... ERROR
Installation failed.
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/cliqueMS/new/cliqueMS.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘cliqueMS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findAnnotationR.cpp -o findAnnotationR.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findCliquesR.cpp -o findCliquesR.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘ncdf4’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: lazy loading failed for package ‘cliqueMS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/cliqueMS/new/cliqueMS.Rcheck/cliqueMS’
CRAN
* installing *source* package ‘cliqueMS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findAnnotationR.cpp -o findAnnotationR.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findCliquesR.cpp -o findCliquesR.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘ncdf4’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: lazy loading failed for package ‘cliqueMS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/cliqueMS/old/cliqueMS.Rcheck/cliqueMS’
DeepBlueR
- Version: 1.27.0
- GitHub: NA
- Source code: https://github.com/cran/DeepBlueR
- Date/Publication: 2023-04-25
- Number of recursive dependencies: 160
Run revdep_details(, "DeepBlueR") for more info
In both
- checking whether package ‘DeepBlueR’ can be installed ... ERROR
Installation failed.
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/DeepBlueR/new/DeepBlueR.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘DeepBlueR’ ...
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
status
"502"
Error in xml.rpc(deepblue_options("url"), "list_column_types", user_key) :
Problems
Error: unable to load R code in package ‘DeepBlueR’
Execution halted
ERROR: lazy loading failed for package ‘DeepBlueR’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/DeepBlueR/new/DeepBlueR.Rcheck/DeepBlueR’
CRAN
* installing *source* package ‘DeepBlueR’ ...
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
status
"502"
Error in xml.rpc(deepblue_options("url"), "list_column_types", user_key) :
Problems
Error: unable to load R code in package ‘DeepBlueR’
Execution halted
ERROR: lazy loading failed for package ‘DeepBlueR’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/DeepBlueR/old/DeepBlueR.Rcheck/DeepBlueR’
fastcpd
- Version: 0.13.1
- GitHub: https://github.com/doccstat/fastcpd
- Source code: https://github.com/cran/fastcpd
- Date/Publication: 2024-04-01 15:50:06 UTC
- Number of recursive dependencies: 182
Run revdep_details(, "fastcpd") for more info
In both
-
R CMD check timed out
-
checking whether package ‘fastcpd’ can be installed ... WARNING
Found the following significant warnings:
/c4/home/henrik/repositories/matrixStats/revdep/library/fastcpd/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:63:13: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations]
/c4/home/henrik/repositories/matrixStats/revdep/library/fastcpd/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:65:7: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations]
/c4/home/henrik/repositories/matrixStats/revdep/library/fastcpd/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:74:9: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations]
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/fastcpd/new/fastcpd.Rcheck/00install.out’ for details.
-
checking installed package size ... NOTE
installed size is 24.5Mb
sub-directories of 1Mb or more:
doc 4.2Mb
help 1.8Mb
libs 17.4Mb
loo
- Version: 2.7.0
- GitHub: https://github.com/stan-dev/loo
- Source code: https://github.com/cran/loo
- Date/Publication: 2024-02-24 23:20:02 UTC
- Number of recursive dependencies: 146
Run revdep_details(, "loo") for more info
In both
- R CMD check timed out
signifinder
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘amap’ ...
* DONE (amap)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
...
* installing *binary* package ‘dbplyr’ ...
* DONE (dbplyr)
* installing *binary* package ‘GenomicAlignments’ ...
* DONE (GenomicAlignments)
* installing *binary* package ‘openair’ ...
* DONE (openair)
* installing *binary* package ‘org.Hs.eg.db’ ...
* DONE (org.Hs.eg.db)
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘amap’ ...
* DONE (amap)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
...
* installing *binary* package ‘dbplyr’ ...
* DONE (dbplyr)
* installing *binary* package ‘GenomicAlignments’ ...
* DONE (GenomicAlignments)
* installing *binary* package ‘openair’ ...
* DONE (openair)
* installing *binary* package ‘org.Hs.eg.db’ ...
* DONE (org.Hs.eg.db)
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
singleCellTK
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘bdsmatrix’ ...
* DONE (bdsmatrix)
...
* installing *binary* package ‘hms’ ...
* DONE (hms)
* installing *binary* package ‘httpuv’ ...
* DONE (httpuv)
* installing *binary* package ‘httr’ ...
* DONE (httr)
* installing *binary* package ‘igraph’ ...
* DONE (igraph)
* installing *binary* package ‘multtest’ ...
* DONE (multtest)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘bdsmatrix’ ...
* DONE (bdsmatrix)
...
* installing *binary* package ‘hms’ ...
* DONE (hms)
* installing *binary* package ‘httpuv’ ...
* DONE (httpuv)
* installing *binary* package ‘httr’ ...
* DONE (httr)
* installing *binary* package ‘igraph’ ...
* DONE (igraph)
* installing *binary* package ‘multtest’ ...
* DONE (multtest)
splatter
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
...
* installing *binary* package ‘genefilter’ ...
* DONE (genefilter)
* installing *binary* package ‘labelled’ ...
* DONE (labelled)
* installing *binary* package ‘nloptr’ ...
* DONE (nloptr)
* installing *binary* package ‘rtracklayer’ ...
* DONE (rtracklayer)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
...
* installing *binary* package ‘genefilter’ ...
* DONE (genefilter)
* installing *binary* package ‘labelled’ ...
* DONE (labelled)
* installing *binary* package ‘nloptr’ ...
* DONE (nloptr)
* installing *binary* package ‘rtracklayer’ ...
* DONE (rtracklayer)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
SPOTlight
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
* installing *binary* package ‘testthat’ ...
* DONE (testthat)
* installing *binary* package ‘BiocFileCache’ ...
* DONE (BiocFileCache)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
* installing *binary* package ‘Seurat’ ...
* DONE (Seurat)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
* installing *binary* package ‘testthat’ ...
* DONE (testthat)
* installing *binary* package ‘BiocFileCache’ ...
* DONE (BiocFileCache)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
* installing *binary* package ‘Seurat’ ...
* DONE (Seurat)
tidybulk
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
trying URL 'https://cloud.r-project.org/src/contrib/tidytext_0.4.2.tar.gz'
Content type 'application/x-gzip' length 3104096 bytes (3.0 MB)
==================================================
downloaded 3.0 MB
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
...
* DONE (quantreg)
* installing *binary* package ‘ragg’ ...
* DONE (ragg)
* installing *binary* package ‘ROCR’ ...
* DONE (ROCR)
* installing *binary* package ‘S4Arrays’ ...
* DONE (S4Arrays)
* installing *binary* package ‘spatstat.geom’ ...
* DONE (spatstat.geom)
* installing *binary* package ‘stringr’ ...
CRAN
trying URL 'https://cloud.r-project.org/src/contrib/tidytext_0.4.2.tar.gz'
Content type 'application/x-gzip' length 3104096 bytes (3.0 MB)
==================================================
downloaded 3.0 MB
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
...
* DONE (quantreg)
* installing *binary* package ‘ragg’ ...
* DONE (ragg)
* installing *binary* package ‘ROCR’ ...
* DONE (ROCR)
* installing *binary* package ‘S4Arrays’ ...
* DONE (S4Arrays)
* installing *binary* package ‘spatstat.geom’ ...
* DONE (spatstat.geom)
* installing *binary* package ‘stringr’ ...
wateRmelon
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beanplot’ ...
* DONE (beanplot)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FlowSorted.Blood.450k)
* installing *source* package ‘FlowSorted.Blood.EPIC’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beanplot’ ...
* DONE (beanplot)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FlowSorted.Blood.450k)
* installing *source* package ‘FlowSorted.Blood.EPIC’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
HenrikBengtsson/matrixStats documentation built on April 12, 2024, 5:32 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
BASiCS
- Version: 2.14.0
- GitHub: https://github.com/catavallejos/BASiCS
- Source code: https://github.com/cran/BASiCS
- Date/Publication: 2023-10-24
- Number of recursive dependencies: 194
Run revdep_details(, "BASiCS") for more info
In both
- checking whether package ‘BASiCS’ can be installed ... ERROR
Installation failed. See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/new/BASiCS.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘BASiCS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BASiCS.cpp -o BASiCS.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo.h:29,
from libraries.h:11,
...
installing to /c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/new/BASiCS.Rcheck/00LOCK-BASiCS/00new/BASiCS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error : in method for ‘Summary’ with signature ‘x="BASiCS_Chain"’: arguments (‘na.rm’) after ‘...’ in the generic must appear in the method, in the same place at the end of the argument list
Error: unable to load R code in package ‘BASiCS’
Execution halted
ERROR: lazy loading failed for package ‘BASiCS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/new/BASiCS.Rcheck/BASiCS’
CRAN
* installing *source* package ‘BASiCS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BASiCS.cpp -o BASiCS.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /c4/home/henrik/repositories/matrixStats/revdep/library/BASiCS/RcppArmadillo/include/RcppArmadillo.h:29,
from libraries.h:11,
...
installing to /c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/old/BASiCS.Rcheck/00LOCK-BASiCS/00new/BASiCS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error : in method for ‘Summary’ with signature ‘x="BASiCS_Chain"’: arguments (‘na.rm’) after ‘...’ in the generic must appear in the method, in the same place at the end of the argument list
Error: unable to load R code in package ‘BASiCS’
Execution halted
ERROR: lazy loading failed for package ‘BASiCS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/BASiCS/old/BASiCS.Rcheck/BASiCS’
brms
- Version: 2.21.0
- GitHub: https://github.com/paul-buerkner/brms
- Source code: https://github.com/cran/brms
- Date/Publication: 2024-03-20 12:30:08 UTC
- Number of recursive dependencies: 201
Run revdep_details(, "brms") for more info
In both
-
R CMD check timed out
-
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘cmdstanr’ -
checking installed package size ... NOTE
installed size is 8.4Mb sub-directories of 1Mb or more: R 3.7Mb doc 3.5Mb
cliqueMS
- Version: 1.16.0
- GitHub: https://github.com/osenan/cliqueMS
- Source code: https://github.com/cran/cliqueMS
- Date/Publication: 2023-10-24
- Number of recursive dependencies: 172
Run revdep_details(, "cliqueMS") for more info
In both
- checking whether package ‘cliqueMS’ can be installed ... ERROR
Installation failed. See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/cliqueMS/new/cliqueMS.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘cliqueMS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findAnnotationR.cpp -o findAnnotationR.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findCliquesR.cpp -o findCliquesR.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘ncdf4’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: lazy loading failed for package ‘cliqueMS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/cliqueMS/new/cliqueMS.Rcheck/cliqueMS’
CRAN
* installing *source* package ‘cliqueMS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
using C++11
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findAnnotationR.cpp -o findAnnotationR.o
g++ -std=gnu++11 -I"/software/c4/cbi/software/_centos7/R-4.3.3-gcc10/lib64/R/include" -DNDEBUG -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/Rcpp/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/BH/include' -I'/c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c findCliquesR.cpp -o findCliquesR.o
In file included from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/armadillo:514,
from /c4/home/henrik/repositories/matrixStats/revdep/library/cliqueMS/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘ncdf4’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: lazy loading failed for package ‘cliqueMS’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/cliqueMS/old/cliqueMS.Rcheck/cliqueMS’
DeepBlueR
- Version: 1.27.0
- GitHub: NA
- Source code: https://github.com/cran/DeepBlueR
- Date/Publication: 2023-04-25
- Number of recursive dependencies: 160
Run revdep_details(, "DeepBlueR") for more info
In both
- checking whether package ‘DeepBlueR’ can be installed ... ERROR
Installation failed. See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/DeepBlueR/new/DeepBlueR.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘DeepBlueR’ ...
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
status
"502"
Error in xml.rpc(deepblue_options("url"), "list_column_types", user_key) :
Problems
Error: unable to load R code in package ‘DeepBlueR’
Execution halted
ERROR: lazy loading failed for package ‘DeepBlueR’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/DeepBlueR/new/DeepBlueR.Rcheck/DeepBlueR’
CRAN
* installing *source* package ‘DeepBlueR’ ...
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
status
"502"
Error in xml.rpc(deepblue_options("url"), "list_column_types", user_key) :
Problems
Error: unable to load R code in package ‘DeepBlueR’
Execution halted
ERROR: lazy loading failed for package ‘DeepBlueR’
* removing ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/DeepBlueR/old/DeepBlueR.Rcheck/DeepBlueR’
fastcpd
- Version: 0.13.1
- GitHub: https://github.com/doccstat/fastcpd
- Source code: https://github.com/cran/fastcpd
- Date/Publication: 2024-04-01 15:50:06 UTC
- Number of recursive dependencies: 182
Run revdep_details(, "fastcpd") for more info
In both
-
R CMD check timed out
-
checking whether package ‘fastcpd’ can be installed ... WARNING
Found the following significant warnings: /c4/home/henrik/repositories/matrixStats/revdep/library/fastcpd/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:63:13: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations] /c4/home/henrik/repositories/matrixStats/revdep/library/fastcpd/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:65:7: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations] /c4/home/henrik/repositories/matrixStats/revdep/library/fastcpd/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:74:9: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations] See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/fastcpd/new/fastcpd.Rcheck/00install.out’ for details. -
checking installed package size ... NOTE
installed size is 24.5Mb sub-directories of 1Mb or more: doc 4.2Mb help 1.8Mb libs 17.4Mb
loo
- Version: 2.7.0
- GitHub: https://github.com/stan-dev/loo
- Source code: https://github.com/cran/loo
- Date/Publication: 2024-02-24 23:20:02 UTC
- Number of recursive dependencies: 146
Run revdep_details(, "loo") for more info
In both
- R CMD check timed out
signifinder
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘amap’ ...
* DONE (amap)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
...
* installing *binary* package ‘dbplyr’ ...
* DONE (dbplyr)
* installing *binary* package ‘GenomicAlignments’ ...
* DONE (GenomicAlignments)
* installing *binary* package ‘openair’ ...
* DONE (openair)
* installing *binary* package ‘org.Hs.eg.db’ ...
* DONE (org.Hs.eg.db)
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘amap’ ...
* DONE (amap)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
...
* installing *binary* package ‘dbplyr’ ...
* DONE (dbplyr)
* installing *binary* package ‘GenomicAlignments’ ...
* DONE (GenomicAlignments)
* installing *binary* package ‘openair’ ...
* DONE (openair)
* installing *binary* package ‘org.Hs.eg.db’ ...
* DONE (org.Hs.eg.db)
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
singleCellTK
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘bdsmatrix’ ...
* DONE (bdsmatrix)
...
* installing *binary* package ‘hms’ ...
* DONE (hms)
* installing *binary* package ‘httpuv’ ...
* DONE (httpuv)
* installing *binary* package ‘httr’ ...
* DONE (httr)
* installing *binary* package ‘igraph’ ...
* DONE (igraph)
* installing *binary* package ‘multtest’ ...
* DONE (multtest)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘bdsmatrix’ ...
* DONE (bdsmatrix)
...
* installing *binary* package ‘hms’ ...
* DONE (hms)
* installing *binary* package ‘httpuv’ ...
* DONE (httpuv)
* installing *binary* package ‘httr’ ...
* DONE (httr)
* installing *binary* package ‘igraph’ ...
* DONE (igraph)
* installing *binary* package ‘multtest’ ...
* DONE (multtest)
splatter
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
...
* installing *binary* package ‘genefilter’ ...
* DONE (genefilter)
* installing *binary* package ‘labelled’ ...
* DONE (labelled)
* installing *binary* package ‘nloptr’ ...
* DONE (nloptr)
* installing *binary* package ‘rtracklayer’ ...
* DONE (rtracklayer)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
...
* installing *binary* package ‘genefilter’ ...
* DONE (genefilter)
* installing *binary* package ‘labelled’ ...
* DONE (labelled)
* installing *binary* package ‘nloptr’ ...
* DONE (nloptr)
* installing *binary* package ‘rtracklayer’ ...
* DONE (rtracklayer)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
SPOTlight
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
* installing *binary* package ‘testthat’ ...
* DONE (testthat)
* installing *binary* package ‘BiocFileCache’ ...
* DONE (BiocFileCache)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
* installing *binary* package ‘Seurat’ ...
* DONE (Seurat)
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beeswarm’ ...
* DONE (beeswarm)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
* installing *binary* package ‘SingleCellExperiment’ ...
* DONE (SingleCellExperiment)
* installing *binary* package ‘testthat’ ...
* DONE (testthat)
* installing *binary* package ‘BiocFileCache’ ...
* DONE (BiocFileCache)
* installing *binary* package ‘scuttle’ ...
* DONE (scuttle)
* installing *binary* package ‘Seurat’ ...
* DONE (Seurat)
tidybulk
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
trying URL 'https://cloud.r-project.org/src/contrib/tidytext_0.4.2.tar.gz'
Content type 'application/x-gzip' length 3104096 bytes (3.0 MB)
==================================================
downloaded 3.0 MB
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
...
* DONE (quantreg)
* installing *binary* package ‘ragg’ ...
* DONE (ragg)
* installing *binary* package ‘ROCR’ ...
* DONE (ROCR)
* installing *binary* package ‘S4Arrays’ ...
* DONE (S4Arrays)
* installing *binary* package ‘spatstat.geom’ ...
* DONE (spatstat.geom)
* installing *binary* package ‘stringr’ ...
CRAN
trying URL 'https://cloud.r-project.org/src/contrib/tidytext_0.4.2.tar.gz'
Content type 'application/x-gzip' length 3104096 bytes (3.0 MB)
==================================================
downloaded 3.0 MB
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘backports’ ...
* DONE (backports)
* installing *binary* package ‘base64enc’ ...
...
* DONE (quantreg)
* installing *binary* package ‘ragg’ ...
* DONE (ragg)
* installing *binary* package ‘ROCR’ ...
* DONE (ROCR)
* installing *binary* package ‘S4Arrays’ ...
* DONE (S4Arrays)
* installing *binary* package ‘spatstat.geom’ ...
* DONE (spatstat.geom)
* installing *binary* package ‘stringr’ ...
wateRmelon
- Version:
- GitHub: https://github.com/HenrikBengtsson/matrixStats
- Source code: NA
- Number of recursive dependencies: 0
Error before installation
Devel
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beanplot’ ...
* DONE (beanplot)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FlowSorted.Blood.450k)
* installing *source* package ‘FlowSorted.Blood.EPIC’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
CRAN
* installing *binary* package ‘abind’ ...
* DONE (abind)
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
* installing *binary* package ‘beanplot’ ...
* DONE (beanplot)
* installing *binary* package ‘BH’ ...
* DONE (BH)
* installing *binary* package ‘BiocGenerics’ ...
* DONE (BiocGenerics)
...
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FlowSorted.Blood.450k)
* installing *source* package ‘FlowSorted.Blood.EPIC’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
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