revdep/problems.md

In HenrikBengtsson/profmem: Simple Memory Profiling for R

DelayedMatrixStats

• Version: 1.12.1
• GitHub: https://github.com/PeteHaitch/DelayedMatrixStats
• Source code: https://github.com/cran/DelayedMatrixStats
• Date/Publication: 2020-11-24
• Number of recursive dependencies: 80

Run revdep_details(, "DelayedMatrixStats") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘BiocParallel’ ‘HDF5Array’ All declared Imports should be used. Unexported objects imported by ':::' calls: ‘DelayedArray:::.get_ans_type’ ‘DelayedArray:::.reduce_array_dimensions’ ‘DelayedArray:::RleArraySeed’ ‘DelayedArray:::get_Nindex_lengths’ ‘DelayedArray:::set_dim’ ‘DelayedArray:::set_dimnames’ ‘DelayedArray:::subset_by_Nindex’ ‘DelayedArray:::to_linear_index’ See the note in ?`:::` about the use of this operator.

mashr

• Version: 0.2.38
• GitHub: https://github.com/stephenslab/mashr
• Source code: https://github.com/cran/mashr
• Date/Publication: 2020-06-19 05:50:11 UTC
• Number of recursive dependencies: 84

Run revdep_details(, "mashr") for more info

In both

• checking tests ... ``` ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output:

  1. ├─base::all.equal(...)
  2. └─base::all.equal.numeric(...)

  ── Skipped tests ────────────────────────────────────────────────────────────── ● Cannot test it due to numerical differences between chol in armadillo and R ... (1) ● file.exists("estimate_null_cor.rds") is not TRUE (1) ● file.exists("estimate_null_cor_alpha.rds") is not TRUE (1)

  ══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test_sampling.R:10:3): Samples from the posterior look right ERROR (test_sampling.R:21:3): Samples from the posterior with linear transformation look right

  [ FAIL 2 | WARN 0 | SKIP 3 | PASS 127 ] Error: Test failures Execution halted ```

• checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: libs 5.8Mb

HenrikBengtsson/profmem documentation built on Oct. 18, 2021, 9:26 p.m.