README.md
In Hiuyu/mutationCheck:
mutationCheck
Check and QC mutations from BAM
Manually check mutations by scanning the original BAM file, and recalculate supporting reads and the variant allele frequency(VAF).
Basicall, two steps are performed, 1. do QC on a read; 2. do QC on a mutant bases. This is now under very naive deveploped, and may
just be used for temporary in-house use.
Installation
A demo package could be installed directly from github:
install.packages ("devtools")
library(devtools)
install_github("Hiuyu/mutationCheck")
Hiuyu/mutationCheck documentation built on May 14, 2019, 9:43 a.m.
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mutationCheck
Check and QC mutations from BAM
Manually check mutations by scanning the original BAM file, and recalculate supporting reads and the variant allele frequency(VAF). Basicall, two steps are performed, 1. do QC on a read; 2. do QC on a mutant bases. This is now under very naive deveploped, and may just be used for temporary in-house use.
Installation
A demo package could be installed directly from github:
install.packages ("devtools")
library(devtools)
install_github("Hiuyu/mutationCheck")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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