DengueSimR01: Simulated dataset of dengue transmission with basic...
In HopkinsIDD/IDSpatialStats: Estimate Global Clustering in Infectious Disease
DengueSimR01 R Documentation
Simulated dataset of dengue transmission with basic reproductive number of 1
Description
Dataset simulated using an agent based model with a spatially heterogeneous population structure. Infectious agents
were introduced resulting in agent to agent transmission. The distance between successive cases in a transmission chain
were randomly drawn from a uniform distribution U(0,100). Each infectious agent resulted in a single transmission to
another agent after a delay of 15 days, reflecting the generation time of dengue. There are 11 transmission chains,
each with a different genotype. The genotypes are subdivided into four serotypes.
Usage
DengueSimR01
Format
Matrix with five columns representing the X and Y coordinates of infected individuals, the time of infection,
the genotype of the infecting pathogen and the serotype of the infecting pathogen.
Author(s)
Justin Lessler and Henrik Salje
HopkinsIDD/IDSpatialStats documentation built on July 25, 2024, 4:56 a.m.
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| DengueSimR01 | R Documentation |
Simulated dataset of dengue transmission with basic reproductive number of 1
Description
Dataset simulated using an agent based model with a spatially heterogeneous population structure. Infectious agents were introduced resulting in agent to agent transmission. The distance between successive cases in a transmission chain were randomly drawn from a uniform distribution U(0,100). Each infectious agent resulted in a single transmission to another agent after a delay of 15 days, reflecting the generation time of dengue. There are 11 transmission chains, each with a different genotype. The genotypes are subdivided into four serotypes.
Usage
DengueSimR01
Format
Matrix with five columns representing the X and Y coordinates of infected individuals, the time of infection, the genotype of the infecting pathogen and the serotype of the infecting pathogen.
Author(s)
Justin Lessler and Henrik Salje
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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