get_intermediate_inf: Calculate the intermediate infection states

In HopkinsIDD/tti: Test-trace-isolate Recursive Equations

Calculate the intermediate infection states

Description

This low-level function stochastically derives the intermediate infections derived from a DQC matrix in one generation

Usage

get_intermediate_inf(dqc, infect, n_inf = 1000, theta = 0.2)

Arguments

dqc	Current values for DQC compartments. All elements of this vector should sum to 1.
infect	INFECT matrix returned by get_infect_mat
n_inf	Number of infections (or effective population size of infected individuals). Default 1000.
theta	Non-negative numeric value. Shape parameter for overdispersion in R. Default 0.2.

Value

Vector of intermediate infection states

HopkinsIDD/tti documentation built on May 24, 2022, 1:11 a.m.