CheckToolAll: CheckToolAll
In HowardChao/RNASeqR: RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
View source: R/cmd_batch_rnaseq_environment_set.R
CheckToolAll R Documentation
CheckToolAll
Description
Check whether 'Hisat2', 'Stringtie' and 'Gffcompare'
are installed on the workstation
Usage
CheckToolAll(path.prefix, print = TRUE)
Arguments
path.prefix
path prefix of 'gene_data/', 'RNASeq_bin/',
'RNASeq_results/', 'Rscript/' and 'Rscript_out/' directories.
print
If TRUE, detailed information will be printed.
If FALSE, detailed information will not be printed.
Value
None
Examples
data(yeast)
## Not run:
CheckToolAll(yeast@path.prefix,
print=TRUE)
## End(Not run)
HowardChao/RNASeqR documentation built on May 5, 2022, 8:32 p.m.
R Package Documentation
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View source: R/cmd_batch_rnaseq_environment_set.R
| CheckToolAll | R Documentation |
CheckToolAll
Description
Check whether 'Hisat2', 'Stringtie' and 'Gffcompare' are installed on the workstation
Usage
CheckToolAll(path.prefix, print = TRUE)
Arguments
path.prefix |
path prefix of 'gene_data/', 'RNASeq_bin/', 'RNASeq_results/', 'Rscript/' and 'Rscript_out/' directories. |
print |
If |
Value
None
Examples
data(yeast)
## Not run:
CheckToolAll(yeast@path.prefix,
print=TRUE)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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