Man pages for HudsonAlpha/MethylDeconBloodSubtypes
Methylation Array Deconvolution
| est.all.wb | Get stage 1 & 2 estimates and T and B cell subtypes |
| fit.cd19.sorted | Fit model for CD19 subtypes using M450 data from sorted B... |
| fit.cd19.sub | Fit model for CD19 B cell subtypes for whole blood |
| fit.cd4.sorted | Fit model for CD4 subtypes on M450 data from sorted CD4 T... |
| fit.cd4.sub | Fit model for CD4 subtypes on whole blood data |
| fit.cd8.sub | Fit model for CD8 subtypes for whole blood data |
| fit.cd8.sub.sorted | Fit model for CD8 subtypes using M450 data from sorted CD8 T... |
| fit.main.nosum1 | Fit the model for the 6 main cell types |
| fit.stage2b | Fit models for stage 2 |
| get.beta.sub | Partition whole blood beta for two-stage model fit |
| get.beta.sub.inner | Partition whole blood beta for two-stage model fit inner |
| get.cpg.list.cd19.sub | Function to get CpG list for CD19 B cell subtypes |
| get.cpg.list.cd4.sub | Get CpG list for CD4 subtypes |
| get.cpg.list.cd8.sub | Get CpG list for CD8 subtypes |
| get.cpg.list.main | Get the CpG list for the model for main cell types. |
| get.cpg.list.stage2b | Get CpG list for stage 2 |
| hello | Hello, World! |
| MethylDeconBloodSubtypes | Deconvolute array-based methylation data. Fit models. |
