API for ICBI/neoantigeR
neoantigen prediction from NGS sequencing data

Global functions
att.info Man page
chosen.column.indicies Man page
compute.database.exon.details Man page
compute.query.exon.details Man page
coverage.file Man page
dataDir Man page
find.indels.location.by.location Man page Source code
gene.df.pacbio Man page
gff.file Man page
gff.names Man page
gffRead Man page Source code
is.installed Man page Source code
mainDir Man page
max.mismatch.size Man page
min.mismatch.size Man page
minimum.flanking.region.size Man page
minimum.sequence.similarity Man page
neoantigenR.get.Model Man page Source code
neoantigenR.get.peptides Man page Source code
neoantigenR.initialize Man page Source code
neoantigenR.write Man page Source code
org Man page
output.folder Man page
pacbio.gencode.overlapping.file Man page
pacbio.gff Man page
pacbio.isof.ids Man page
percOverlap Man page
protein.database.file.name Man page
reference.gff Man page
reference.gff.file Man page
reference.gff.info Man page
reference.gff.info.chosen Man page
refseq.pacbio.name.ids Man page
retrieve.geneName.pacbioID.mapping.v2 Man page Source code
sample.pacbio.gencode.id.mapping Man page
target.gene.list Man page
uniprot.human.database Man page
uniprot.protein.names.new Man page
uniprot.protein.swissprot.index Man page
use.reference.annotation.gff Man page
validate.in.database.boolean Man page
write.dna.seq.by.reference.genome Man page
write.dna.sequence.reference Man page Source code
ICBI/neoantigeR documentation built on June 30, 2017, 12:01 a.m.