In IFARbiostats/ifar.reports: A Collection of stylesheets/report templates

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abstract: \thispagestyle{firststyle} \vskip 30em This document provides an example of how to use ifar_handout template to produce well-formatted pdf documents. \clearpage

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library(knitr)
#opts_chunk$set(cache=F, size='Large', fig.pos='H', dev='cairo_pdf', dev.args=list(family="libertine"))
opts_chunk$set(comment=NA, warning=F, tidy=T, message=F)
opts_knit$set(aliases=c(h = 'fig.height', w = 'fig.width', c='fig.cap'))
options(digits=3) 
par(lend=1)
.dt <- date()

Introduction

This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com.

Section 2

When you click the Knit button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:

summary(cars)

Section 2.1

You can also embed plots, for example:

plot(cars)

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Section 3

Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.

library(xtable)
mtcar2 <- cbind(mtcars, mtcars)
print(xtable(mtcar2[1:6,1:11]))
#mktable2(exclude, use.rownames=F, caption="Participants excluded$^a$ from per-protocol analysis.", shortcap = "Participants excluded from per-protocol analysis", alignment="lSSS",  headerrows=0, labelwidth=.15, colnames=exclude.descrip, size="footnotesize", footnotes="A total of 27 individuals excluded for non-adherence to study procedures (either or both adherence scores less than 0.60), and an additional two with BMI greater than 35 kg/m$^2$ at trial baseline", label="PPexclude")

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Flow of participants through the trial

Intention-to-treat sample

#mktable2(t1, transpose=T, caption="Description of ITT sample, N = 149; Mean (Standard Deviation) or N (Percent) shown.", shortcap="Description of Intention-to-Treat Sample", row.descrip = t1.descrip, size="small", footnotes=c("Proportion of planned exercise visits attended", "Proportion of planned supplements taken", "Participants with both exercise and product compliance scores at least 0.60", "Excludes two individuals with out-of-range BMI values at screening"), label="description", alignment="cc", headerrows=1, headerlabel="", labelwidth=.35, width=.9)

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IFARbiostats/ifar.reports documentation built on May 8, 2019, 10:54 a.m.