IFB-ElixirFr/ProMetIS
Multi-omics phenotyping of the LAT and MX2 knockout mice

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IFB-ElixirFr/ProMetIS: Multi-omics phenotyping of the LAT and MX2 knockout mice
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Multi-omics phenotyping of the LAT and MX2 knockout mice

.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
ProMetIS.Rproj
R/ImbertEtAl_2021_ScientificData.R R/ProMetIS-package.R R/allGenerics.R R/common.R R/constants.R R/post_processing.R README.md
desktop.ini
inst/extdata/1_processed/ics/dataMatrix.tsv
inst/extdata/1_processed/ics/sampleMetadata.tsv
inst/extdata/1_processed/ics/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_liver_c18hypersil_pos/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_liver_c18hypersil_pos/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_liver_c18hypersil_pos/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acquity_neg/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acquity_neg/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acquity_neg/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acquity_pos/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acquity_pos/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acquity_pos/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18hypersil_pos/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_c18hypersil_pos/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18hypersil_pos/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/1_processed/preclinical/dataMatrix.tsv
inst/extdata/1_processed/preclinical/sampleMetadata.tsv
inst/extdata/1_processed/preclinical/variableMetadata.tsv
inst/extdata/1_processed/proteomics_liver/Liver Proteomics Strasbourg_20190128_pride.xlsx
inst/extdata/1_processed/proteomics_liver/ProMetIS_proteomics_liver_proline_output.xlsx
inst/extdata/1_processed/proteomics_plasma/RAW_Plasma_proteomics_Toulouse_Prostar_imputation_stat_PX_092021.xlsx
inst/extdata/1_processed/proteomics_plasma/prometis_allsamples_export_Proline_PX_092021.xlsx
inst/extdata/2_post_processed/metabolomics_liver_c18hypersil_pos/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_liver_c18hypersil_pos/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_liver_c18hypersil_pos/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acquity_neg/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acquity_neg/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acquity_neg/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acquity_pos/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acquity_pos/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acquity_pos/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18hypersil_pos/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18hypersil_pos/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18hypersil_pos/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/2_post_processed/metadata_supp.rdata
inst/extdata/2_post_processed/preclinical/dataMatrix.tsv
inst/extdata/2_post_processed/preclinical/sampleMetadata.tsv
inst/extdata/2_post_processed/preclinical/variableMetadata.tsv
inst/extdata/2_post_processed/proteomics_liver/dataMatrix.tsv
inst/extdata/2_post_processed/proteomics_liver/sampleMetadata.tsv
inst/extdata/2_post_processed/proteomics_liver/variableMetadata.tsv
inst/extdata/2_post_processed/proteomics_plasma/dataMatrix.tsv
inst/extdata/2_post_processed/proteomics_plasma/sampleMetadata.tsv
inst/extdata/2_post_processed/proteomics_plasma/variableMetadata.tsv
inst/extdata/palette.tsv
man/ProMetIS-package.Rd man/filter_overimputed.Rd man/imputation_info.Rd man/subsetting.Rd tests/testthat.R tests/testthat/test_2_post_processed.R vignettes/ImbertEtAl_2021_ScientificData.Rmd
vignettes/ImbertEtAl_2021_ScientificData.html
vignettes/ProMetIS.bib
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_2021_supp_table_part0.xlsx
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_2021_supp_table_part1.xlsx
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_2021_supp_table_part2.xlsx
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_2021_supp_table_part3.xlsx
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_2021_supp_table_part4.xlsx
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_2021_supp_table_part5.xlsx
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig10A_techval_metabo_radar.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig10Abis_techval_metabo_parallel.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig2_preclinical_categories.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig5B_techval_preclin_pca.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig6_techval_proteo_irt_cv.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig7A_techval_metabo_radar.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig7Abis_techval_metabo_parallel.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Fig7B_techval_metabo_pca.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS10_intensity_range.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS11_cv_sex.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS12_cv_imp.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS5_metabo_standards_liver_c18hypersil_pos.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS5_metabo_standards_liver_hilic_neg.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS5_metabo_standards_plasma_c18hypersil_pos.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS5_metabo_standards_plasma_hilic_neg.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS6_techval_metabo_radar_none.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS6_techval_metabo_radar_pool.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS6_techval_metabo_radar_sample.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS7_metabo_cv_cumulative.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS8_metabo_icc_cumulative.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_FigS9_metabo_cv_boxplots.pdf
vignettes/figures/ImbertEtAl_2021_ScientificData/ImbertEtAl_Table1_techval_metabo_metrics.tsv
vignettes/figures/ImbertEtAl_2021_ScientificData/sets_dims_aggregated.pdf vignettes/figures/ImbertEtAl_2021_ScientificData/sets_dims_postprocessed.pdf
vignettes/figures/phenomis_3table_format.png
vignettes/figures/prometis_consortium.png
vignettes/figures/prometis_datasets.png
vignettes/figures/prometis_design.png
vignettes/figures/prometis_graphical_abstract.png
vignettes/figures/prometis_logo.png
vignettes/figures/prometis_package_structure.png
vignettes/post_processing.Rmd
vignettes/post_processing.html
vignettes/tutorial.Rmd
vignettes/tutorial.html
IFB-ElixirFr/ProMetIS documentation built on May 21, 2024, 8:02 p.m.

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