plotTrajbackground: Plot profiles and trajectories
In INPE-LAGEE/cqmaTools: Tools for managing the data flow at the INPE's CQMA

Description Usage Arguments Value Author(s)

Plot the input data into map, section, and profile graphs. These plots are stored in disk

plotTrajbackground(file.in, path.out, traj.interpol, traj.intersections,
  traj.plot, device, map.xlim, map.ylim, map.height, map.width, sec.width,
  sec.height, prof.height, prof.width, nsd, maxfm.ppm, stations.df,
  plot2file, logger, trajCnames, obsCnames, profileCnames, trajFileMet)

`file.in`	A character. The path to a filtered observations file or flag filtered raw data
`path.out`	A character. The path to a folder to store the results
`traj.interpol`	A list of numeric. The interpolated values of teh trajectories over the sea
`traj.intersections`	A list made of a character vector and a list. The character vector is the path to each trajectory file while the list contains the first row in the trajectory file which lies over the sea
`traj.plot`	A vector of character. The file path to trajectories to plot additional to those in traj.intersections[[1]]
`device`	A character. Image format, i.e. PNG
`map.xlim`	A numeric vector. Map's min & max longitude
`map.ylim`	A numeric vector. Map's min & max latitude
`map.height`	A numeirc. Map image size
`map.width`	A numeirc. Map image size
`sec.width`	A numeric. Crosssection map image size
`sec.height`	A numeric. Crosssection map image size
`prof.height`	A numeric. Profile image size
`prof.width`	A numeric. Profile image size
`nsd`	A numeric. Number of standard deviations to use to filter the interpolated data
`maxfm.ppm`	A numeric. Maximum number of units away from the central tendency
`stations.df`	A data.frame with metereological station data. It must contain at least the columns c("name", "lon", "lat")
`plot2file`	A logical or NA. Should plots be stored as files? Use NA to not plot anything
`logger`	A log4r object
`trajCnames`	A character. Column names of hysplit files
`obsCnames`	A character. Filtered observation column names
`profileCnames`	A character. Column names of the pofiles
`trajFileMet`	A character. Metadata included in the trajectory's file names